Basic Information
Locus ID:
Ag9G02245
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Phytochrome A-associated F-box
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 263058798 | 263059673 | - | Ag9G02245 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 32,869.49 Da | 33.55 | 74.36 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02440.1 | F-box family protein. EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta. | 0 |
| RefSeq | XP_017235619.1 | PREDICTED: phytochrome A-associated F-box protein [Daucus carota subsp. sativus] | 0 |
| Q8LEA8 | Phytochrome A-associated F-box protein OS=Arabidopsis thaliana OX=3702 GN=EID1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166HF49 | Phytochrome A-associated F-box protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002826 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.412282 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 5.251221 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.805211 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 6.967906 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.580403 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.771735 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.940786 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.098243 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 136.841431 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 168.335052 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 185.300598 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 125.771965 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 127.077217 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 130.485779 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 22.171669 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 19.181784 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 47.283684 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 46.617985 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 32.728783 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 39.289864 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 48.398022 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 76.943863 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 76.593552 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 61.522339 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 59.668423 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 94.185272 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 69.963539 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 58.046974 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 86.653755 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 22.211792 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 25.704725 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 19.837032 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 37.340645 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.378462 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 21.764885 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 28.274591 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 46.978207 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 50.454021 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 88.94912 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 83.97084 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 41.464417 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.633783 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.168926 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 40.517269 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 44.2258 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.291039 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 29.440638 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.355295 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 4.265777 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.731968 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35181, jg8895 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5219 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029489 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163960 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1349, Sbi_jg35230 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3380 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003555 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73687, Sgl77619 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007245, gene:ENSEOMG00000036960 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0013330, CQ.Regalona.r1.7BG0015320 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30009120 |
| Apiaceae | Apium graveolens | 2 | Ag2G02535, Ag9G02245 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G010150 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715299, gene-LOC120110215 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.966.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G21446 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G02440.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g02350.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045070.2N |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g11410, gene.Cymno04g14270 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g03030, gene.Thate06g04000 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6259, nbisL1-mrna-9623 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.349 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024870 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2740, BH05.2856, CH09.2672 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0376140, gene-QOZ80_5BG0423360 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013822 |
| Poaceae | Oryza coarctata | 1 | Oco09G007670 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g30190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G118900 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G010200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G386000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG034650, gene_TRIDC1BG040130 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G229800.1.cds1, TraesCS1B02G244300.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb346660_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-48417 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26710 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.129, evm.TU.LG04.623 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g32380, gene.Posoc02g08180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.785 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21441 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19989 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18508 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.224 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009536 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17348 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5262 |
| Salicaceae | Populus euphratica | 3 | populus_peu27248, populus_peu27256, populus_peu31235 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608911 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029374 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13291_chr07_- |
| Zosteraceae | Zostera marina | 2 | Zosma06g21560.v3.1, Zosma189g00040.v3.1 |