Basic Information
Locus ID:
Ag9G02235
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 262924002 | 262926431 | + | Ag9G02235 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 38,133.92 Da | 34.49 | 98.02 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 1 | 80 | 3.77742E-13 | - |
| CDD | cd04476 | RPA1_DBD_C | 209 | 302 | 2.21744E-18 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 211 | 291 | 3.0E-10 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 98 | 164 | 9.14E-6 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 202 | 297 | 1.28E-16 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 82 | 2.1E-5 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 182 | 322 | 2.5E-20 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 85 | 167 | 1.8E-9 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017245331.1 | PREDICTED: replication factor A protein 1-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5B9L1 | Rep_fac-A_C domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_008303 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|
Orthology