halophFGD

Basic Information

Locus ID: Ag9G02179

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Receptor-like cytosolic serine threonine-protein kinase RBK2

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	259849950	259852497	+	Ag9G02179

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.77	21,917.54 Da	51.64	71.64	-0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	69	106	6.55E-10	IPR011009
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	65	188	1.4E-9	-
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	189	9.206194	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	89	101	-	IPR008271
MobiDBLite	mobidb-lite	consensus disorder prediction	1	30	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	16	30	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G18910.1	Protein kinase superfamily protein.
RefSeq	XP_017230874.1	PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Daucus carota subsp. sativus]
Swiss-Prot	Q8RXC8	Receptor-like cytosolic serine/threonine-protein kinase RBK2 OS=Arabidopsis thaliana OX=3702 GN=RBK2 PE=1 SV=1
TrEMBL	A0A6L5BC96	Protein kinase domain-containing protein OS=Apium graveolens OX=4045 GN=AG4045_025688 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.364425	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.954485	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.448939	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.250009	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.486495	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0.329042	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.889254	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.349694	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.453174	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	0.214997	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	0.455082	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	0.225859	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.071902	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.052008	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.392131	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.224367	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.434309	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.357604	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.59778	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.576385	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.886128	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.900078	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.752341	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.449289	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.663733	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.427853	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.472843	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.16621	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.592545	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.196606		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.116753		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.02594		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	1.751047		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.285076		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.870616		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0.990837		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.327023		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.494156		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	0	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.060404	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.148125	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	7.515908	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	4.350735	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.76732	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	3.471324	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	8.13102	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	3.284061	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	1.743441	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	2.065786	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	1.238228	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	2	Ag9G02179, AgUnG00539