Basic Information
Locus ID:
Ag9G02174
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein PALE CRESS
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 259262195 | 259266651 | - | Ag9G02174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.10 | 36,623.36 Da | 60.52 | 93.16 | -0.69 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G48120.1 | pale cress protein (PAC). The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist. | 0 |
| RefSeq | XP_017235092.1 | PREDICTED: protein PALE CRESS, chloroplastic [Daucus carota subsp. sativus] | 0 |
| Q39089 | Protein PALE CRESS, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PAC PE=2 SV=1 | 0 | |
| TrEMBL | A0A166HCY1 | Protein PALE CRESS, chloroplastic OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002754 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.999929 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.446122 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.937998 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.41101 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.739706 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 15.475156 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 14.64869 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.654727 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.470493 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.602617 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.829437 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.6912 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.068275 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.91116 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.183677 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.223451 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 8.822845 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.599754 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 18.80109 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 13.71625 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 16.904858 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.428153 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 14.338725 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.91346 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.975059 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.080357 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 20.386835 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 19.890593 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.629455 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.852995 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.390923 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 22.20603 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.749409 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 27.307247 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 16.158066 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 16.308397 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.182964 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 18.143656 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.564088 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.471292 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 10.754054 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 24.574594 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 17.237068 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.39467 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 19.039658 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 28.312555 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 15.342948 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 34.827244 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.144419 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 31.94845 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35274 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4446 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006221 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g083850 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18958, Sbi_jg37411 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5252 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008166 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03035, Sgl24897, Sgl30043 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009991, gene:ENSEOMG00000030285 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0019140, CQ.Regalona.r1.4BG0011310 |
| Apiaceae | Apium graveolens | 1 | Ag9G02174 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G000960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713861 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2588.V1.1, AsparagusV1_05.627.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G23185 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G48120.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001558m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g30040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniS05187g320.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2144 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2258 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g04720 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate05g25030, gene.Thate06g18650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1015 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00008124, Pov_00009581 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24830 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2580, BH05.2669, CH05.2759 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0374400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0064290.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013511, gene-QYE76_013704, gene-QYE76_069551 |
| Poaceae | Oryza coarctata | 2 | Oco09G008840, Oco10G008990 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g32680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G133800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr18G008450, Chr22G009200 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G407700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037060, gene_TRIDC1BG042030 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G246800.1, TraesCS1B02G257400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb287380_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23751 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28187 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.500, evm.TU.LG22.1518 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g11710 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.898 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21325 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19912 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18411 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.536, evm.TU.utg000003l.567 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009836, Maker00009958 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1520 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5158 |
| Salicaceae | Populus euphratica | 1 | populus_peu27161 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611064 |
| Solanaceae | Solanum chilense | 1 | SOLCI003897100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031150 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.18035_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1972 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32390.v3.1 |