Basic Information
Locus ID:
Ag9G02166
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 258941804 | 258942268 | - | Ag9G02166 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.60 | 16,991.65 Da | 84.82 | 80.39 | -0.01 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63095.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. Encodes a Protease inhibitor/seed storage/LTP family protein | 0 |
| RefSeq | XP_044503412.1 | uncharacterized protein LOC123223992 [Mangifera indica] | 0 |
| TrEMBL | A0A166HCQ0 | AAI domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002746 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.531261 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.34195 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.055176 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.428694 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.357028 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.734271 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.388832 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.452125 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.739949 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 3.367445 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 3.591321 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 337.198578 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 170.780716 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 158.87825 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.115619 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.522502 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.098206 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.945931 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.376978 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.085382 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.014145 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.370713 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.201825 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.09615 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 74.843842 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.173204 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.280529 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.242454 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.460015 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.215313 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.120062 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.025855 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.115004 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.089503 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.046185 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.195726 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.948959 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg35279 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6230 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah029542 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g162920 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg16126, Sbi_jg56772 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24627 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013686 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl72020, Sgl75590 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000040658 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.7AG0015400 |
| Apiaceae | Apium graveolens | 2 | Ag2G02405, Ag9G02166 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103696549 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.858.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G20558, Ftri9G10902 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G63095.1 |
| Brassicaceae | Brassica nigra | 3 | BniB06g052040.2N, BniB06g061220.2N, BniB08g077050.2N |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g14120, gene.Cymno14g10330 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6301 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.3586, AH03.3912, BH01.3933, BH03.4202, CH01.4197 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3BG0279340, gene-QOZ80_7AG0579840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0371980.1.CDS1 |
| Poaceae | Oryza coarctata | 4 | Oco05G013880, Oco06G012450, Oco13G014490, Oco14G015380 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g24300.1, LOC_Os07g46210.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G349500, gene-BS78_02G373600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0305022 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G011680, Chr07G011090, Chr0G021180, Chr12G004580 ... |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG016750, gene_TRIDC2BG020410 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G151600.1.cds1, TraesCS4B02G155100.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb017420_P001, Zm00001eb329500_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-1530, nbis-gene-3262, nbis-gene-33143 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g1175, Zma_g3614, Zma_g5693, Zma_g6986 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.554 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g20800 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.955, evm.TU.Scaffold_5_RagTag.956 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-11384, nbisL1-mrna-11385, nbisL1-mrna-21320 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-7694, nbisL1-mrna-7695 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11578, nbisL1-mrna-18406 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000003l.189, add.evm.TU.utg000006l.110 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009625, Maker00013693 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17312, nbisL1-mrna-20717, nbisL1-mrna-20718 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-5154, nbisL1-mrna-7581 |
| Salicaceae | Populus euphratica | 3 | populus_peu27154, populus_peu27155, populus_peu31142 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618160 |
| Solanaceae | Solanum chilense | 2 | SOLCI004281900, SOLCI007033100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008782, gene-LOC107029223 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16594 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2028 |