Basic Information
Locus ID:
Ag9G02146
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
HEAT repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 257918714 | 257932564 | + | Ag9G02146 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 77,383.83 Da | 49.20 | 104.28 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 189 | 221 | 4.2E-7 | IPR000225 |
| Pfam | PF00651 | BTB/POZ domain | 530 | 629 | 7.8E-25 | IPR000210 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 224 | 263 | 6.7E-8 | IPR000225 |
| SUPERFAMILY | SSF54695 | POZ domain | 528 | 630 | 3.92E-29 | IPR011333 |
| SUPERFAMILY | SSF48371 | ARM repeat | 167 | 505 | 6.05E-58 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 428 | 519 | 9.9E-9 | IPR011989 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 520 | 663 | 7.2E-41 | IPR011333 |
| Gene3D | G3DSA:1.25.10.10 | - | 205 | 427 | 6.4E-46 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 13 | 204 | 3.6E-25 | IPR011989 |
| SMART | SM00185 | arm_5 | 349 | 389 | 37.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 266 | 306 | 0.015 | IPR000225 |
| SMART | SM00185 | arm_5 | 132 | 180 | 1.9E-5 | IPR000225 |
| SMART | SM00185 | arm_5 | 464 | 504 | 0.65 | IPR000225 |
| SMART | SM00185 | arm_5 | 224 | 264 | 7.4E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 308 | 348 | 1.1 | IPR000225 |
| SMART | SM00185 | arm_5 | 182 | 222 | 8.4E-9 | IPR000225 |
| SMART | SM00185 | arm_5 | 80 | 131 | 9.5 | IPR000225 |
| SMART | SM00225 | BTB_4 | 536 | 633 | 2.6E-24 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 536 | 603 | 18.410025 | IPR000210 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 193 | 228 | 12.8274 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 319 | 361 | 10.0974 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 235 | 277 | 10.2024 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 143 | 193 | 10.2374 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19330.1 | ARM repeat protein interacting with ABF2. Encodes an armadillo repeat protein involved in the abscisic acid response. The protein interacts with a transcription factor, ABF2, which controls ABA-dependent gene expression via the G-box-type ABA-responsive elements. | 0 |
| RefSeq | XP_017229551.1 | PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 [Daucus carota subsp. sativus] | 0 |
| B9DHT4 | ARM REPEAT PROTEIN INTERACTING WITH ABF2 OS=Arabidopsis thaliana OX=3702 GN=ARIA PE=1 SV=2 | 0 | |
| TrEMBL | A0A166HC88 | BTB domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002731 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 25.057949 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 24.848948 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.998404 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 29.682196 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.218418 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 51.090588 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 34.473213 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 48.687096 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 43.397522 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 39.104332 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 39.967373 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.786388 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.109589 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 40.512653 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.201838 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.873033 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.729491 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.852228 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.347437 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 17.283501 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 18.085909 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.484396 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.849251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.95212 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.120689 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 17.075586 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.160973 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.318426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 17.292101 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.748818 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.265565 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 11.82739 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 24.141865 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.184221 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 23.771427 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 12.197866 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 12.296154 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.836111 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.727211 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 17.331367 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.778194 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 19.467569 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 25.769281 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 52.869881 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 51.044254 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 19.833302 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 28.098665 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 35.120644 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 42.678181 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 38.472519 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg16125, jg8797 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15577, gene_5045 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020278, Ah030075 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g163130 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg10326, Sbi_jg16118, Sbi_jg23526, Sbi_jg5119 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13145, Seu_jg24634 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003890 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl00078, Sgl05165, Sgl72016, Sgl75585 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000013730, gene:ENSEOMG00000031011 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.3AG0015080, CQ.Regalona.r1.3AG0015560 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30027170, pistato.v30237070 |
| Apiaceae | Apium graveolens | 2 | Ag2G02393, Ag9G02146 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016940, COCNU_16G001330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723614 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1797.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G19206, Ftri12G20753 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT5G13060.1, AT5G19330.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10012773m.g.v1.0, Thhalv10012813m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g25080.v2.2, Sp6g30920.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g043360.2N, BniB02g043420.2N, BniB02g049440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq06G2070, Ceq06G2073, Ceq09G1320 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1410 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno04g04010, gene.Cymno05g03760 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0135s00028.v1.0, Dusal.1046s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate04g23970, gene.Thate05g25980, gene.Thate09g10230 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG04.1070, evm.TU.LG07.220, evm.TU.LG11.1074 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008077 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24802, Lb8G36615 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.2553, BH05.2648, BH08.2275, CH06.1521 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0374120, gene-QOZ80_5BG0422180 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0063780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013381 |
| Poaceae | Oryza coarctata | 2 | Oco09G009450, Oco10G009180 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g33050.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_08G076500, gene-BS78_09G136000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505163, Pt_Chr0505419 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G021030, Chr12G016930, Chr18G008580, Chr22G009030 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G414200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG037460, gene_TRIDC1BG042510 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G249400.1, TraesCS1B02G260100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb287530_P001, Zm00001eb349910_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-23773, nbis-gene-23774 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28198 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.216, evm.TU.LG04.536, evm.TU.LG06.1719 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g08150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.984, evm.TU.Scaffold_6_RagTag.722 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15968 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-4151, nbisL1-mrna-5068 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11598, nbisL1-mrna-604 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000006l.303, evm.TU.utg000011l.435 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007486, Maker00014040 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15338, nbisL1-mrna-9985 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3450, nbisL1-mrna-7605 |
| Salicaceae | Populus euphratica | 5 | populus_peu07356, populus_peu15039, populus_peu21355 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132608139, gene-LOC132610958 |
| Solanaceae | Solanum chilense | 2 | SOLCI002234300, SOLCI006754000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107023416, gene-LOC107031538 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4271 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1228 |
| Zosteraceae | Zostera marina | 2 | Zosma01g37860.v3.1, Zosma02g23080.v3.1 |