halophFGD

Basic Information

Locus ID: Ag9G02124

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: ATMRK1

Description: Protein kinase domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	256772032	256786150	+	Ag9G02124

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.07	62,964.45 Da	31.27	80.71	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	120	201	7.0E-19	IPR001245
Pfam	PF02574	Homocysteine S-methyltransferase	259	566	2.4E-77	IPR003726
SUPERFAMILY	SSF82282	Homocysteine S-methyltransferase	254	570	4.58E-82	IPR036589
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	119	201	2.52E-21	IPR011009
Gene3D	G3DSA:3.20.20.330	-	247	566	1.9E-101	IPR036589
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	65	107	5.1E-7	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	114	213	2.9E-24	-
SMART	SM00219	tyrkin_6	77	201	2.0E-5	IPR020635
ProSiteProfiles	PS50011	Protein kinase domain profile.	1	204	8.796309	IPR000719
ProSiteProfiles	PS50970	Homocysteine-binding domain profile.	246	568	47.368641	IPR003726

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G63250.1	homocysteine methyltransferase 2. Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
RefSeq	XP_017230236.1	PREDICTED: selenocysteine methyltransferase-like [Daucus carota subsp. sativus]
Swiss-Prot	P56707	Selenocysteine methyltransferase OS=Astragalus bisulcatus OX=20406 GN=SMTA PE=1 SV=1
TrEMBL	A0A498IPV3	Protein kinase domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_027054 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	18.215513	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	12.729974	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	16.776917	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.669071	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	16.955013	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	21.219923	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	16.303089	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	14.369665	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	48.933182	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	47.015057	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	47.23262	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	56.200771	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	54.989143	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	53.901405	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	45.163937	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	43.713375	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	29.794144	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	37.816849	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	28.766247	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	36.283367	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	36.742676	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	35.990185	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	44.133015	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	35.998486	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	41.452866	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	33.38372	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	23.715534	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	30.94042	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	33.066071	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	32.603092		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	27.390528		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	25.940302		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	40.419971		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	38.520645		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	43.090202		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	28.849743		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	30.412319		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	34.883965		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	40.640518	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	20.111509	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	16.029139	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	39.974838	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	27.178186	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	26.70286	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	24.927446	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	40.898304	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	30.026026	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	34.669174	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	33.424431	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	31.248865	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg27872, jg34936, jg8775
Aizoaceae	Mesembryanthemum crystallinum	2	gene_18455, gene_19378
Amaranthaceae	Atriplex hortensis	2	Ah000340, Ah025809
Amaranthaceae	Beta vulgaris	3	BVRB_5g119700, BVRB_6g141850, BVRB_6g141890
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13844, Sbi_jg13880, Sbi_jg30758, Sbi_jg52077 ... Sbi_jg58501
Amaranthaceae	Salicornia europaea	2	Seu_jg28374, Seu_jg9768
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004946, GOSA_00028751
Amaranthaceae	Suaeda glauca	4	Sgl34411, Sgl39821, Sgl53774, Sgl59038
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003682, gene:ENSEOMG00000003959 ... gene:ENSEOMG00000007419, gene:ENSEOMG00000022836, gene:ENSEOMG00000023562, gene:ENSEOMG00000026173
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.5AG0025100, CQ.Regalona.r1.5BG0026600 ... CQ.Regalona.r1.6AG0014590, CQ.Regalona.r1.6BG0015270
Anacardiaceae	Pistacia vera	3	pistato.v30026840, pistato.v30225400, pistato.v30236380
Apiaceae	Apium graveolens	3	Ag1G01842, Ag5G02028, Ag9G02124
Arecaceae	Cocos nucifera	3	COCNU_02G005220, COCNU_03G001340, COCNU_06G015720
Arecaceae	Phoenix dactylifera	3	gene-LOC103711353, gene-LOC103716281, gene-LOC103718093
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1550.V1.1, AsparagusV1_03.526.V1.1 ... AsparagusV1_08.2236.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G13166, Ftri12G21440, Ftri5G28153
Brassicaceae	Arabidopsis thaliana	3	AT3G22740.1, AT3G25900.1, AT3G63250.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004584m.g.v1.0, Thhalv10006074m.g.v1.0 ... Thhalv10021051m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp2g15140.v2.2, Sp3g20460.v2.2, Sp5g00280.v2.2
Brassicaceae	Brassica nigra	4	BniB01g039780.2N, BniB02g066520.2N, BniB06g061110.2N ... BniB08g076720.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq03G2067, Ceq07G0326
Casuarinaceae	Casuarina glauca	2	Cgl03G2206, Cgl07G0333
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno09g02630, gene.Cymno15g05560
Dunaliellaceae	Dunaliella salina	1	Dusal.0343s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g40470, gene.Thate08g10640, gene.Thate09g21320
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-4988
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG03.547, evm.TU.LG04.1122, evm.TU.LG11.994
Plantaginaceae	Plantago ovata	2	Pov_00008008, Pov_00019266
Plumbaginaceae	Limonium bicolor	5	Lb0G37672, Lb1G01526, Lb1G01534, Lb1G06615, Lb5G29223
Poaceae	Echinochloa crus-galli	10	AH01.4497, AH02.3438, AH05.4002, BH02.3530, BH05.4099 ... CH01.5115, CH02.3060, CH02.3279, CH05.4316, Contig192.136
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0035170, gene-QOZ80_1BG0085260 ... gene-QOZ80_3AG0239150, gene-QOZ80_3BG0288840, gene-QOZ80_5AG0397290, gene-QOZ80_5BG0445800
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0292600.1, HORVU.MOREX.r3.4HG0395940.1 ... HORVU.MOREX.r3.5HG0431780.1
Poaceae	Lolium multiflorum	6	gene-QYE76_000790, gene-QYE76_000832, gene-QYE76_000836 ... gene-QYE76_042498, gene-QYE76_056201, gene-QYE76_069716
Poaceae	Oryza coarctata	8	Oco01G021540, Oco02G022040, Oco05G006740, Oco06G006930 ... Oco19G004490, Oco20G004460, Oco23G010110, Oco24G009870
Poaceae	Oryza sativa	4	LOC_Os01g56610.1, LOC_Os03g12110.1, LOC_Os10g28630.1 ... LOC_Os12g41390.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G435000, gene-BS78_08G139500
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0101795, Pt_Chr0104179, Pt_Chr0601554, Pt_Chr0601585
Poaceae	Sporobolus alterniflorus	6	Chr01G027650, Chr04G018750, Chr06G019620, Chr12G011750 ... Chr19G007890, Chr27G008770
Poaceae	Thinopyrum elongatum	3	Tel3E01G504400, Tel4E01G414500, Tel5E01G117400
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG045400, gene_TRIDC3BG051520 ... gene_TRIDC4AG008590, gene_TRIDC4BG042550, gene_TRIDC5AG008130, gene_TRIDC5BG010410
Poaceae	Triticum aestivum	9	TraesCS3A02G322600.1, TraesCS3B02G343000.1 ... TraesCS3D02G308900.1, TraesCS4A02G065100.1, TraesCS4B02G242700.1, TraesCS4D02G242100.1, TraesCS5A02G053100.1, TraesCS5B02G063300.1, TraesCS5D02G064400.1
Poaceae	Zea mays	4	Zm00001eb031360_P001, Zm00001eb135800_P002 ... Zm00001eb151780_P001, Zm00001eb399940_P001
Poaceae	Zoysia japonica	3	nbis-gene-11785, nbis-gene-2447, nbis-gene-47548
Poaceae	Zoysia macrostachya	2	Zma_g1762, Zma_g26101
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.1102, evm.TU.LG03.1977, evm.TU.LG06.1788 ... evm.TU.LG09.874, evm.TU.LG11.1141, evm.TU.LG14.274
Posidoniaceae	Posidonia oceanica	2	gene.Posoc07g09920, gene.Posoc08g00580
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.81, evm.TU.Scaffold_9_RagTag.937
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-1498, nbisL1-mrna-1504, nbisL1-mrna-21272
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18085, nbisL1-mrna-2976
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17425, nbisL1-mrna-18375
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000001l.47, evm.TU.utg000003l.512
Rhizophoraceae	Kandelia obovata	2	Maker00004650, Maker00009283
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-11675, nbisL1-mrna-1499
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-2848, nbisL1-mrna-5119
Salicaceae	Populus euphratica	5	populus_peu07412, populus_peu15073, populus_peu21028 ... populus_peu21423, populus_peu32737
Solanaceae	Lycium barbarum	2	gene-LOC132609295, gene-LOC132610829
Solanaceae	Solanum chilense	1	SOLCI002373400
Solanaceae	Solanum pennellii	2	gene-LOC107029752, gene-LOC107031665
Tamaricaceae	Reaumuria soongarica	3	STRG.16866_chr09_+, gene_11029, gene_8441
Tamaricaceae	Tamarix chinensis	3	TC04G0169, TC07G2657, TC12G1367
Zosteraceae	Zostera marina	1	Zosma02g16710.v3.1