Basic Information
Locus ID:
Ag9G02107
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 255403410 | 255425207 | - | Ag9G02107 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 401,704.59 Da | 43.87 | 93.28 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01201 | PH_BEACH | 2785 | 2950 | 3.15733E-26 | IPR023362 |
| CDD | cd06071 | Beach | 2986 | 3265 | 1.14352E-151 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3395 | 3429 | 1.6E-4 | IPR001680 |
| Pfam | PF14844 | PH domain associated with Beige/BEACH | 2895 | 2948 | 1.4E-7 | IPR023362 |
| Pfam | PF02138 | Beige/BEACH domain | 2986 | 3265 | 8.8E-116 | IPR000409 |
| Pfam | PF00400 | WD domain, G-beta repeat | 3349 | 3378 | 0.01 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3319 | 3596 | 5.27E-32 | IPR036322 |
| SUPERFAMILY | SSF81837 | BEACH domain | 2977 | 3265 | 9.94E-120 | IPR036372 |
| SUPERFAMILY | SSF50729 | PH domain-like | 2785 | 2951 | 1.17E-15 | - |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 1129 | 1279 | 4.02E-10 | IPR013320 |
| SUPERFAMILY | SSF48371 | ARM repeat | 183 | 991 | 9.79E-7 | IPR016024 |
| Gene3D | G3DSA:2.30.29.30 | - | 2785 | 2947 | 2.7E-8 | IPR011993 |
| Gene3D | G3DSA:1.10.1540.10 | BEACH domain | 2975 | 3265 | 2.5E-133 | IPR036372 |
| Gene3D | G3DSA:2.130.10.10 | - | 3290 | 3469 | 1.4E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 3470 | 3600 | 3.0E-6 | IPR015943 |
| Gene3D | G3DSA:2.60.120.200 | - | 1117 | 1250 | 1.6E-7 | - |
| SMART | SM01026 | Beach_2 | 2985 | 3265 | 1.5E-200 | IPR000409 |
| SMART | SM00320 | WD40_4 | 3390 | 3429 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3338 | 3379 | 0.001 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3472 | 3519 | 74.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3551 | 3590 | 1.9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3397 | 3432 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3354 | 3382 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3397 | 3432 | 10.363778 | - |
| ProSiteProfiles | PS50197 | BEACH domain profile. | 2973 | 3265 | 135.153763 | IPR000409 |
| ProSiteProfiles | PS51783 | BEACH-type PH domain profile. | 2782 | 2948 | 28.750854 | IPR023362 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 3416 | 3430 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 411 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2071 | 2097 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1961 | 2005 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1958 | 2027 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03060.1 | Beige/BEACH domain ;WD domain, G-beta repeat protein. Encodes a WD/BEACH domain protein involved in cell morphogenesis. | 0 |
| RefSeq | XP_017217937.1 | PREDICTED: protein SPIRRIG isoform X2 [Daucus carota subsp. sativus] | 0 |
| F4HZB2 | Protein SPIRRIG OS=Arabidopsis thaliana OX=3702 GN=SPI PE=1 SV=1 | 0 | |
| TrEMBL | A0A5B6ZA74 | Putative BEACH domain-containing protein lvsA OS=Davidia involucrata OX=16924 GN=Din_010322 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.248294 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.973437 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.70729 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.592873 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 6.171244 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 5.492308 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.534454 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 3.900018 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 10.876683 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.628521 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.169772 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.361886 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 10.194444 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.690061 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 9.152355 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.278708 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.752629 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.427147 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.194552 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.227975 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.019665 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 7.548696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 7.754349 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 5.677696 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.015561 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.124477 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.383355 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.450405 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.258063 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.151147 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.463496 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.331006 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.194241 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.415664 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.861988 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.541638 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.616093 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.03297 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.601354 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 4.961266 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.574153 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 14.404142 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 9.098189 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.728119 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 14.917759 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.692324 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.778872 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.880628 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 5.19284 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.709408 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg35353, jg37846, jg37847, jg8753 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13532 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000300, Ah000308, Ah000311 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g120020, BVRB_5g120070 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg31613, Sbi_jg31614, Sbi_jg31620, Sbi_jg57659 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg25335, Seu_jg25338 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00025834, GOSA_00025839 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl54271, Sgl54274, Sgl59610, Sgl59613 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000005857, gene:ENSEOMG00000021099 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0025350, CQ.Regalona.r1.5BG0026880 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30026580, pistato.v30034790 |
| Apiaceae | Apium graveolens | 1 | Ag9G02107 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G001520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723915 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1927.V1.1, AsparagusV1_08.1928.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri12G26736, Ftri15G17043 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G03060.1, AT4G02660.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006519m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g02060.v2.2, Sp6g02580.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g001080.2N, BniB03g038490.2N, BniB08g039630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2063 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2178 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g01080 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g28170, gene.Thate08g10760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2608 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1143 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007941, Pov_00007942, Pov_00034934 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28947 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.780, CH01.773, Contig309.117 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0216630, gene-QOZ80_3BG0261900 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0509920.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G023310, Oco06G024200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g53280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G084400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0107118 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G005510, Chr04G028420, Chr07G027370, Chr09G009540 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G612000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG056030, gene_TRIDC5BG060060 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G383300.1, TraesCS5B02G387800.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb056940_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16119 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2818 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.2847, evm.TU.LG02.1123, evm.TU.LG02.1126 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g02270, gene.Posoc07g10210 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60381.2, evm.TU.60382.2 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11316, nbisL1-mrna-21258 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10698 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10353 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.334 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014130 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1488, nbisL1-mrna-9953 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19742, nbisL1-mrna-5109 |
| Salicaceae | Populus euphratica | 5 | populus_peu15098, populus_peu15099, populus_peu15100 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610773 |
| Solanaceae | Solanum chilense | 1 | SOLCI005213800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031012 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16417 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2621 |
| Zosteraceae | Zostera marina | 6 | Zosma02g18550.v3.1, Zosma04g00330.v3.1, Zosma04g00340.v3.1 ... |