halophFGD

Basic Information

Locus ID: Ag9G02049

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	251023102	251023782	-	Ag9G02049

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.74	25,952.63 Da	31.05	99.51	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
ProSiteProfiles	PS51257	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	29	6.0	-

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_017234572.1	PREDICTED: uncharacterized protein LOC108208554 [Daucus carota subsp. sativus]	0
TrEMBL	A0A161XKB5	F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_008536 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	15.143866	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	6.502879	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.126074	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.937727	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.603902	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	17.644213	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	14.213966	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	10.370243	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	0.995796	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.456335	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.118139	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.96064	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	2.231991	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	1.425261	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	10.043388	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	10.023643	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	4.406502	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	5.373919	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.732383	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	12.550604	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	8.350224	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	1.33389	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	2.375856	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	4.44409	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	3.610813	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	2.630959	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	3.943219	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	3.528129	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.01042	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	1.693461		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.519094		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.283095		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	2.580197		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	2.446853		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	2.403985		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.43867		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	1.689039		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.48274		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.233406	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.381836	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	1.703206	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	3.015842	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.179031	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	8.617283	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	5.041142	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.174738	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	12.07508	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.983432	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.921296	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.433319	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	3	Ag3G00385, Ag8G01592, Ag9G02049