halophFGD

Basic Information

Locus ID: Ag9G02003

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: LOX9

Description: Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	248323670	248329651	+	Ag9G02003

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.43	18,936.82 Da	45.15	96.39	0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00305	Lipoxygenase	1	149	7.0E-81	IPR013819
SUPERFAMILY	SSF48484	Lipoxigenase	1	148	1.44E-69	IPR036226
Gene3D	G3DSA:1.20.245.10	-	1	152	8.8E-68	-
ProSiteProfiles	PS51393	Lipoxygenase iron-binding catalytic domain profile.	1	166	72.705544	IPR013819
ProSitePatterns	PS00711	Lipoxygenases iron-binding region signature 1.	17	31	-	IPR020833
ProSitePatterns	PS00081	Lipoxygenases iron-binding region signature 2.	44	54	-	IPR020834
PRINTS	PR00087	Lipoxygenase signature	17	34	8.3E-14	IPR013819
PRINTS	PR00087	Lipoxygenase signature	37	57	8.3E-14	IPR013819

Gene Ontology

Molecular Function:

GO:0016702 (oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen) GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K00454 (lipoxygenase [EC:1.13.11.12])

Pathway:

ko00591 (Linoleic acid metabolism) map00591 (Linoleic acid metabolism) ko00592 (alpha-Linolenic acid metabolism) map00592 (alpha-Linolenic acid metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00113 (Jasmonic acid biosynthesis)

Reaction:

R03626 (Linoleate + Oxygen <=> (9Z,11E)-(13S)-13-Hydroperoxyoctadeca-9,11-dienoic acid) R07864 ((9Z,12Z,15Z)-Octadecatrienoic acid + Oxygen <=> 9(S)-HPOT) R07869 ((9Z,12Z,15Z)-Octadecatrienoic acid + Oxygen <=> 13(S)-HPOT)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G72520.1	PLAT/LH2 domain-containing lipoxygenase family protein.
RefSeq	XP_017252782.1	PREDICTED: linoleate 13S-lipoxygenase 3-1, chloroplastic-like [Daucus carota subsp. sativus]
Swiss-Prot	O24371	Linoleate 13S-lipoxygenase 3-1, chloroplastic OS=Solanum tuberosum OX=4113 GN=LOX3.1 PE=1 SV=1
TrEMBL	A0A6L5B9V3	Lipoxygenase OS=Apium graveolens OX=4045 GN=AG4045_007851 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium album	1	gene:ENSEOMG00000011612
Apiaceae	Apium graveolens	3	Ag9G02002, Ag9G02003, Ag9G02004
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.982.V1.1
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.1243
Poaceae	Sporobolus alterniflorus	1	Chr15G011610
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.1404