halophFGD

Basic Information

Locus ID: Ag9G01939

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Polygalacturonase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	239874284	239876555	+	Ag9G01939

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.76	46,976.54 Da	55.04	74.11	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00295	Glycosyl hydrolases family 28	119	357	1.2E-59	IPR000743
SUPERFAMILY	SSF51126	Pectin lyase-like	83	419	1.89E-104	IPR011050
Gene3D	G3DSA:2.160.20.10	-	76	413	2.9E-95	IPR012334
SMART	SM00710	pbh1	246	272	520.0	IPR006626
SMART	SM00710	pbh1	326	347	11.0	IPR006626
SMART	SM00710	pbh1	296	316	2200.0	IPR006626
ProSitePatterns	PS00502	Polygalacturonase active site.	303	316	-	IPR000743
MobiDBLite	mobidb-lite	consensus disorder prediction	28	75	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	39	73	-	-

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0004650 (polygalacturonase activity)

KEGG Pathway

KO Term:

K01213 (galacturan 1,4-alpha-galacturonidase [EC:3.2.1.67])

Pathway:

ko00040 (Pentose and glucuronate interconversions) map00040 (Pentose and glucuronate interconversions) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00081 (Pectin degradation)

Reaction:

R01982 (Pectate + H2O <=> D-Galacturonate + Pectate) R07413 (Digalacturonate + H2O <=> 2 D-Galacturonate)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48100.1	Pectin lyase-like superfamily protein.
RefSeq	XP_017229753.1	PREDICTED: polygalacturonase At1g48100-like [Daucus carota subsp. sativus]
Swiss-Prot	Q949Z1	Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1
TrEMBL	A0A169WTQ6	Polygalacturonase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002533 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.730248	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	1.249731	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	3.220488	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	2.058636	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	2.494854	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	1.70035	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	1.35056	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0.517737	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	45.168762	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	49.140434	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	54.364792	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	41.798222	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	33.333012	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	34.963036	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0.663079	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.728347	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	2.090273	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.314506	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	1.072578	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.043258	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	0.643917	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.250074	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	5.004156	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	1.520732	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.662332	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	3.53176	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.351635		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.997408		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0.814331		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.291386		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	1.637859		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0.171938		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0.149877		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.030876		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	17.482801	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	2.581629	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0.312179	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.051093	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.042602	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	3.571602	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	3.744704	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	2.482195	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg28140, jg30000
Aizoaceae	Mesembryanthemum crystallinum	3	gene_10256, gene_15682, gene_19235
Amaranthaceae	Atriplex hortensis	4	Ah000037, Ah005360, Ah019682, Ah019956
Amaranthaceae	Beta vulgaris	3	BVRB_3g059660, BVRB_4g079790, BVRB_5g122360
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg17585, Sbi_jg17586, Sbi_jg31225, Sbi_jg38189 ... Sbi_jg58047, Sbi_jg62256, Sbi_jg6320, Sbi_jg6321
Amaranthaceae	Salicornia europaea	3	Seu_jg15538, Seu_jg25674, Seu_jg835
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00003648, GOSA_00004547, GOSA_00007397
Amaranthaceae	Suaeda glauca	6	Sgl01605, Sgl06770, Sgl24096, Sgl29277, Sgl54609, Sgl59945
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000006997, gene:ENSEOMG00000015250 ... gene:ENSEOMG00000032101, gene:ENSEOMG00000044935
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.3AG0012700, CQ.Regalona.r1.3BG0012790 ... CQ.Regalona.r1.4AG0004840, CQ.Regalona.r1.5BG0029220
Anacardiaceae	Pistacia vera	2	pistato.v30007660, pistato.v30232510
Apiaceae	Apium graveolens	4	Ag10G00289, Ag8G01810, Ag9G01939, Ag9G02355
Arecaceae	Cocos nucifera	2	COCNU_01G000580, COCNU_04G011570
Arecaceae	Phoenix dactylifera	5	gene-LOC103701031, gene-LOC103701126, gene-LOC103722672 ... gene-LOC120105526, gene-LOC120105531
Asparagaceae	Asparagus officinalis	2	AsparagusV1_02.2240.V1.1, AsparagusV1_07.1164.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G09012, Ftri9G33356
Brassicaceae	Arabidopsis thaliana	4	AT1G02460.1, AT1G48100.1, AT1G56710.1, AT4G01890.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10007481m.g.v1.0, Thhalv10011452m.g.v1.0 ... Thhalv10023906m.g.v1.0, Thhalv10029273m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g01530.v2.2, Sp1g35060.v2.2, Sp6g01740.v2.2
Brassicaceae	Brassica nigra	5	BniB02g000190.2N, BniB03g037980.2N, BniB04g018910.2N ... BniB04g062980.2N, BniB08g040570.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G0499, Ceq09G1401
Casuarinaceae	Casuarina glauca	2	Cgl06G0514, Cgl09G1492
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g05620
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g01650, gene.Thate06g19130
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6213
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG04.509, evm.TU.LG11.1132
Plantaginaceae	Plantago ovata	4	Pov_00007108, Pov_00007109, Pov_00016513, Pov_00022543
Plumbaginaceae	Limonium bicolor	3	Lb1G04320, Lb1G06758, Lb2G12092
Poaceae	Echinochloa crus-galli	9	AH02.1379, AH02.1538, AH05.3190, BH02.1443, BH02.1608 ... BH05.3188, CH02.1572, CH02.1758, CH05.3235
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0013910, gene-QOZ80_1AG0015450 ... gene-QOZ80_1BG0062730, gene-QOZ80_1BG0064290, gene-QOZ80_5AG0400170, gene-QOZ80_5BG0448840
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0069260.1, HORVU.MOREX.r3.7HG0708260.1
Poaceae	Lolium multiflorum	2	gene-QYE76_010709, gene-QYE76_052660
Poaceae	Oryza coarctata	6	Oco01G008720, Oco01G009430, Oco02G008890, Oco02G009790 ... Oco09G006110, Oco10G005780
Poaceae	Oryza sativa	2	LOC_Os01g19170.1, LOC_Os05g20020.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G129900, gene-BS78_03G143600 ... gene-BS78_06G227100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0501393, Pt_Chr0603679
Poaceae	Sporobolus alterniflorus	6	Chr01G022740, Chr02G021540, Chr03G007030, Chr03G007660 ... Chr05G012400, Chr08G007360
Poaceae	Thinopyrum elongatum	3	Tel1E01G502300, Tel5E01G888800, Tel7E01G565300
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG046270, gene_TRIDC1BG052390 ... gene_TRIDC7AG046220, gene_TRIDC7BG038250
Poaceae	Triticum aestivum	6	TraesCS1A02G311100.1, TraesCS1B02G322500.1 ... TraesCS1D02G311000.1, TraesCS7A02G330000.1, TraesCS7B02G230600.1, TraesCS7D02G326800.1
Poaceae	Zea mays	4	Zm00001eb129970_P001, Zm00001eb131090_P001 ... Zm00001eb339720_P001, Zm00001eb340640_P001
Poaceae	Zoysia japonica	4	nbis-gene-13458, nbis-gene-17829, nbis-gene-51016 ... nbis-gene-6604
Poaceae	Zoysia macrostachya	4	Zma_g10185, Zma_g27945, Zma_g7848, Zma_g7919
Portulacaceae	Portulaca oleracea	6	evm.TU.LG02.1324, evm.TU.LG06.1609, evm.TU.LG08.1269 ... evm.TU.LG09.650, evm.TU.LG11.964, evm.TU.LG22.171
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13110, gene.Posoc06g21340
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_1_RagTag.32, evm.TU.Scaffold_2_RagTag.2125 ... evm.TU.Scaffold_6_RagTag.1230, evm.TU.Scaffold_9_RagTag.712
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-16215, nbisL1-mrna-21508, nbisL1-mrna-8251
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13615, nbisL1-mrna-20039, nbisL1-mrna-3795 ... nbisL1-mrna-7791
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-1061, nbisL1-mrna-18575, nbisL1-mrna-5127
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000003l.650, evm.TU.utg000011l.790 ... evm.TU.utg000012l.21
Rhizophoraceae	Kandelia obovata	3	Maker00007760, Maker00011185, Maker00011337
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-13510, nbisL1-mrna-1633, nbisL1-mrna-21995 ... nbisL1-mrna-7941
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-28, nbisL1-mrna-4015, nbisL1-mrna-5325
Salicaceae	Populus euphratica	8	populus_peu06846, populus_peu13178, populus_peu13220 ... populus_peu13221, populus_peu15572, populus_peu20745, populus_peu27393, populus_peu31381
Solanaceae	Lycium barbarum	3	gene-LOC132598489, gene-LOC132599826, gene-LOC132615506
Solanaceae	Solanum chilense	3	SOLCI001455200, SOLCI003820900, SOLCI006174100
Solanaceae	Solanum pennellii	3	gene-LOC107015524, gene-LOC107018436, gene-LOC107029442
Tamaricaceae	Reaumuria soongarica	2	STRG.17610_chr09_+, gene_588
Tamaricaceae	Tamarix chinensis	2	TC07G2782, TC12G1719
Zosteraceae	Zostera marina	2	Zosma01g27200.v3.1, Zosma01g37050.v3.1