Basic Information
Locus ID:
Ag9G01928
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 238702505 | 238722348 | - | Ag9G01928 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 118,206.97 Da | 40.61 | 88.65 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 669 | 1029 | 6.9906E-153 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 726 | 1031 | 4.2E-91 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 664 | 1023 | 9.29E-112 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 671 | 909 | 1.5E-80 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 913 | 1030 | 5.3E-40 | - |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 795 | 874 | 1.5E-80 | - |
| SMART | SM00119 | hect_3 | 688 | 1031 | 2.0E-133 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 690 | 1031 | 86.701286 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17205.1 | ubiquitin protein ligase 6. | 0 |
| RefSeq | XP_017228515.1 | PREDICTED: E3 ubiquitin-protein ligase UPL6 [Daucus carota subsp. sativus] | 0 |
| Q8RWB8 | E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A169WTK0 | HECT-type E3 ubiquitin transferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002525 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 39.269421 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 32.594612 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 33.391006 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 35.674316 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 35.790752 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 35.04866 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 31.772951 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 31.538723 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 43.761971 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 44.017635 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 46.994854 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 45.200802 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 41.646442 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 35.808262 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 18.612926 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.328596 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.819983 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 28.79875 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 20.718006 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 27.576946 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 32.599789 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.171059 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 23.412554 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 22.010809 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 21.327776 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 34.258217 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 22.85268 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.243662 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.749147 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 9.570645 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 12.785862 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.411527 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 18.651405 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 12.446084 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 15.729142 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 10.314611 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 8.544259 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.641393 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.319717 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.99618 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 14.758846 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 46.119587 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 36.310314 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 41.601704 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 37.333679 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 43.106651 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 32.470787 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 29.099495 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 34.151752 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 35.516239 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28134 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11187, gene_2729 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019978 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g059750 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg38182, Sbi_jg6307 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15544 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003639 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01593, Sgl06761 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011886, gene:ENSEOMG00000029493 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0012830, CQ.Regalona.r1.3BG0012900 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30232670 |
| Apiaceae | Apium graveolens | 2 | Ag8G02194, Ag9G01928 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000690 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715777, gene-LOC120103986 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3210.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G00075, Ftri2G18609 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G17205.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019984m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g15400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g047530.2N, BniB07g052790.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1391 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1482 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05990 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0371s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g17740 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1146 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026306 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G20938, Lb3G20939, Lb3G20940, Lb3G20941 |
| Poaceae | Echinochloa crus-galli | 2 | BH05.1113, CH05.1260 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0403890, gene-QOZ80_5BG0452280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0024690.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009914 |
| Poaceae | Oryza coarctata | 2 | Oco09G002840, Oco10G002910 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g06690.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G059800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0501815, Pt_Chr0501877 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G011920, Chr18G000490, Chr22G014630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G198200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG015460, gene_TRIDC1BG018750 |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G106100.3, TraesCS1B02G123400.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb282520_P003, Zm00001eb412620_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-23477 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26474 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1617, evm.TU.LG11.972 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g13290 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.686 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1285 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18462 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6369 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.804 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012572 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5268 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13119 |
| Salicaceae | Populus euphratica | 2 | populus_peu06853, populus_peu20763 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626692 |
| Solanaceae | Solanum chilense | 1 | SOLCI002837100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007824 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8539 |
| Zosteraceae | Zostera marina | 1 | Zosma02g18230.v3.1 |