halophFGD

Basic Information

Locus ID: Ag9G01926

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: NIN1

Description: Neutral invertase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	238128944	238134025	-	Ag9G01926

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.26	75,981.16 Da	36.38	84.89	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12899	Alkaline and neutral invertase	194	635	5.8E-216	IPR024746
SUPERFAMILY	SSF48208	Six-hairpin glycosidases	211	636	3.23E-50	IPR008928
Gene3D	G3DSA:1.50.10.10	-	224	626	3.6E-11	IPR012341

Gene Ontology

Biological Process:

GO:0005975 (carbohydrate metabolic process)

Molecular Function:

GO:0033926 (endo-alpha-N-acetylgalactosaminidase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G06500.1	Plant neutral invertase family protein.
RefSeq	XP_017229931.1	PREDICTED: alkaline/neutral invertase A, mitochondrial-like [Daucus carota subsp. sativus]
Swiss-Prot	B9DFA8	Alkaline/neutral invertase C, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=INVC PE=1 SV=1
TrEMBL	Q9ZR47	Alkaline/neutral invertase OS=Daucus carota OX=4039 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.822626	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	9.788054	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.694753	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	12.562812	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	12.102122	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	23.60387	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	11.332864	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	16.766569	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	20.010227	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	25.430164	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.454502	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	9.563002	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	9.229507	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.307889	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	17.484472	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	21.172167	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	11.302129	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	17.226389	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	13.605392	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	28.259415	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	17.565197	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.129316	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.495256	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	10.085485	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	9.71697	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.053197	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	7.375783	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	5.701146	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	9.01792	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.795527		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	3.271646		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.30762		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	17.137783		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	13.188685		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	27.058514		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.858678		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	9.964009		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	17.000341		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.384103	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.864424	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.204165	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	29.903196	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	32.507782	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	8.003496	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	13.659054	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	29.528786	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	11.939093	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	26.759754	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	27.137148	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	23.293293	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16461, jg28272, jg29992, jg5619
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10247, gene_2723, gene_6784, gene_8401
Amaranthaceae	Atriplex hortensis	3	Ah005342, Ah007035, Ah019987
Amaranthaceae	Beta vulgaris	1	BVRB_4g080050
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg17561, Sbi_jg26994, Sbi_jg33558, Sbi_jg36017 ... Sbi_jg517, Sbi_jg62210
Amaranthaceae	Salicornia europaea	3	Seu_jg4101, Seu_jg814, Seu_jg8262
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00002937, GOSA_00003633, GOSA_00007417, GOSA_00027825
Amaranthaceae	Suaeda glauca	8	Sgl01588, Sgl06757, Sgl19325, Sgl21026, Sgl24116, Sgl29295 ... Sgl73271, Sgl76792
Amaranthaceae	Chenopodium album	12	gene:ENSEOMG00000007818, gene:ENSEOMG00000009886 ... gene:ENSEOMG00000010920, gene:ENSEOMG00000014735, gene:ENSEOMG00000028920, gene:ENSEOMG00000029007, gene:ENSEOMG00000030010, gene:ENSEOMG00000036992, gene:ENSEOMG00000039773, gene:ENSEOMG00000041490, gene:ENSEOMG00000042111, gene:ENSEOMG00000044468
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.3AG0012910, CQ.Regalona.r1.3BG0012950 ... CQ.Regalona.r1.4AG0004610, CQ.Regalona.r1.4AG0013000, CQ.Regalona.r1.4BG0004620, CQ.Regalona.r1.4BG0014570, CQ.Regalona.r1.9BG0005260
Anacardiaceae	Pistacia vera	4	pistato.v30057010, pistato.v30080870, pistato.v30169810 ... pistato.v30232690
Apiaceae	Apium graveolens	5	Ag11G04364, Ag1G00550, Ag6G02013, Ag6G02279, Ag9G01926
Arecaceae	Cocos nucifera	2	COCNU_01G000780, COCNU_16G004870
Arecaceae	Phoenix dactylifera	3	gene-LOC103706133, gene-LOC103709680, gene-LOC103710534
Asparagaceae	Asparagus officinalis	4	AsparagusV1_02.2225.V1.1, AsparagusV1_02.852.V1.1 ... AsparagusV1_07.1207.V1.1, AsparagusV1_08.3253.V1.1
Asteraceae	Flaveria trinervia	5	Ftri13G16079, Ftri16G05451, Ftri18G12267, Ftri2G13905 ... Ftri8G21164
Brassicaceae	Arabidopsis thaliana	4	AT1G56560.1, AT3G05820.1, AT3G06500.1, AT5G22510.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10012973m.g.v1.0, Thhalv10020219m.g.v1.0 ... Thhalv10020291m.g.v1.0, Thhalv10023341m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g06210.v2.2, Sp3g04680.v2.2, Sp3g05450.v2.2 ... Sp6g22750.v2.2
Brassicaceae	Brassica nigra	4	BniB01g057140.2N, BniB02g041060.2N, BniB02g060110.2N ... BniB07g059970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq05G1201, Ceq05G1766, Ceq06G1096, Ceq09G1389
Casuarinaceae	Casuarina glauca	4	Cgl05G1212, Cgl05G1757, Cgl06G1136, Cgl09G1480
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g06560, gene.Cymno05g05980, gene.Cymno07g00150
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate01g16680, gene.Thate02g01550, gene.Thate02g16200 ... gene.Thate09g02500
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG02.1264, evm.TU.LG03.2569, evm.TU.LG09.723 ... evm.TU.LG11.1148
Plantaginaceae	Plantago ovata	3	Pov_00015840, Pov_00022553, Pov_00038152
Plumbaginaceae	Limonium bicolor	7	Lb1G00711, Lb1G05638, Lb1G06745, Lb3G18925, Lb3G18926 ... Lb3G19855, Lb6G31435
Poaceae	Echinochloa crus-galli	12	AH01.3839, AH02.1552, AH07.2025, AH09.894, BH01.4182 ... BH02.1617, BH07.1992, BH09.964, CH01.4468, CH02.1771, CH07.1843, CH09.1080
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0015580, gene-QOZ80_1BG0064400 ... gene-QOZ80_2AG0132690, gene-QOZ80_2BG0188080, gene-QOZ80_3AG0246010, gene-QOZ80_3BG0282130, gene-QOZ80_4AG0318670
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0165830.1, HORVU.MOREX.r3.3HG0258530.2 ... HORVU.MOREX.r3.4HG0381060.1
Poaceae	Lolium multiflorum	3	gene-QYE76_022691, gene-QYE76_052828, gene-QYE76_068395
Poaceae	Oryza coarctata	7	Oco01G009530, Oco02G009880, Oco03G011470, Oco04G011900 ... Oco06G014510, Oco07G005160, Oco08G005130
Poaceae	Oryza sativa	4	LOC_Os01g22900.1, LOC_Os02g32730.1, LOC_Os03g20020.1 ... LOC_Os04g33490.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G373300, gene-BS78_04G150300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0107891, Pt_Chr0302846, Pt_Chr0302916, Pt_Chr0603594 ... Pt_Chr0705135
Poaceae	Sporobolus alterniflorus	12	Chr01G033190, Chr02G022680, Chr04G009780, Chr05G013580 ... Chr07G001940, Chr09G015340, Chr0G019710, Chr0G029250, Chr12G006360, Chr13G011260, Chr15G012220, Chr23G013690
Poaceae	Thinopyrum elongatum	4	Tel2E01G521100, Tel3E01G355600, Tel3E01G460800 ... Tel4E01G323900
Poaceae	Triticum dicoccoides	6	gene_TRIDC2AG042400, gene_TRIDC2BG045520 ... gene_TRIDC3AG028020, gene_TRIDC3BG035130, gene_TRIDC4AG016560, gene_TRIDC4BG034250
Poaceae	Triticum aestivum	9	TraesCS2A02G292900.1, TraesCS2B02G309800.1 ... TraesCS2D02G291100.2, TraesCS3A02G195400.1, TraesCS3B02G232600.1, TraesCS3D02G200800.1, TraesCS4A02G124800.1, TraesCS4B02G179600.2, TraesCS4D02G181200.1
Poaceae	Zea mays	4	Zm00001eb015090_P005, Zm00001eb131170_P001 ... Zm00001eb181370_P001, Zm00001eb340670_P001
Poaceae	Zoysia japonica	6	nbis-gene-1804, nbis-gene-18903, nbis-gene-3483 ... nbis-gene-51026, nbis-gene-6466, nbis-gene-7753
Poaceae	Zoysia macrostachya	6	Zma_g10268, Zma_g1342, Zma_g16405, Zma_g21220, Zma_g3748 ... Zma_g7922
Portulacaceae	Portulaca oleracea	7	evm.TU.LG08.1481, evm.TU.LG18.1009, evm.TU.LG18.1536 ... evm.TU.LG19.351, evm.TU.LG20.344, evm.TU.LG20.865, evm.TU.LG22.373
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g13390, gene.Posoc05g22710
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_13_RagTag.464, evm.TU.Scaffold_1_RagTag.47 ... evm.TU.Scaffold_2_RagTag.1266, evm.TU.Scaffold_6_RagTag.1222
Rhizophoraceae	Carallia pectinifolia	7	nbisL1-mrna-16202, nbisL1-mrna-2865, nbisL1-mrna-2930 ... nbisL1-mrna-30642, nbisL1-mrna-3913, nbisL1-mrna-3969, nbisL1-mrna-8235
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13682, nbisL1-mrna-17305, nbisL1-mrna-3787 ... nbisL1-mrna-785
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-1053, nbisL1-mrna-18748, nbisL1-mrna-21033 ... nbisL1-mrna-5138
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000009l.464, evm.TU.utg000011l.785 ... evm.TU.utg000012l.31, evm.TU.utg000015l.241
Rhizophoraceae	Kandelia obovata	4	Maker00004980, Maker00008014, Maker00011349, Maker00015355
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-12368, nbisL1-mrna-13515, nbisL1-mrna-4162 ... nbisL1-mrna-7928
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-22152, nbisL1-mrna-24676, nbisL1-mrna-4024 ... nbisL1-mrna-41, nbisL1-mrna-5473
Salicaceae	Populus euphratica	7	populus_peu06122, populus_peu06856, populus_peu08582 ... populus_peu13201, populus_peu13258, populus_peu15588, populus_peu19984
Solanaceae	Lycium barbarum	4	gene-LOC132598468, gene-LOC132600549, gene-LOC132612822 ... gene-LOC132626756
Solanaceae	Solanum pennellii	4	gene-LOC107004475, gene-LOC107004811, gene-LOC107008289 ... gene-LOC107009180
Tamaricaceae	Reaumuria soongarica	4	STRG.28396_chr04_+, STRG.32467_chr09_-, gene_4670, gene_6462
Tamaricaceae	Tamarix chinensis	3	TC01G1400, TC02G1116, TC02G3563
Zosteraceae	Zostera marina	3	Zosma01g36990.v3.1, Zosma03g17910.v3.1, Zosma04g24430.v3.1