Basic Information
Locus ID:
Ag9G01867
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Condensin-2 complex subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 233919287 | 233926524 | + | Ag9G01867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 147,788.66 Da | 41.54 | 96.22 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12717 | non-SMC mitotic condensation complex subunit 1 | 912 | 1090 | 4.9E-25 | IPR032682 |
| SUPERFAMILY | SSF48371 | ARM repeat | 379 | 999 | 2.03E-26 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 214 | 631 | 6.3E-12 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 864 | 1001 | 1.5E-5 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1309 | 1330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 157 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1298 | 1330 | - | - |
| Coils | Coil | Coil | 1183 | 1210 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15890.1 | binding. | 0 |
| RefSeq | XP_017233640.1 | PREDICTED: condensin-2 complex subunit D3 [Daucus carota subsp. sativus] | 0 |
| O24610 | Condensin-2 complex subunit CAP-D3 OS=Arabidopsis thaliana OX=3702 GN=CAP-D3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A169WRH0 | Cnd1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002468 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.860287 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 1.367407 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.803279 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.807427 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.980264 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.718057 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.881236 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.733133 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 9.862467 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 10.020788 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 10.154103 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 9.520902 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 7.066882 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.598524 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.762022 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.287744 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.117103 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 1.994952 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.186206 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.990255 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.20898 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 2.711665 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 2.444296 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.780546 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.129623 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.533481 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.401274 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.775646 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 2.816637 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.116303 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.263309 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.088838 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.658132 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.137687 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.422599 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.094542 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.139334 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.100012 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.125288 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.757099 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.763509 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.125628 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.870668 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.267802 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.393695 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.990813 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.543551 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.950847 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.848027 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 3.232802 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12416 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8930 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah020930, Ah039261 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg59918, Sbi_jg59919, Sbi_jg62858 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23996 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021830 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl03434, Sgl08479, Sgl08480, Sgl08542, Sgl08543 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013149, gene:ENSEOMG00000031157 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0008980, CQ.Regalona.r1.9AG0005210 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30234340 |
| Apiaceae | Apium graveolens | 1 | Ag9G01867 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G002330, COCNU_12G002430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715120 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.2128.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G14543 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15890.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024228m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g14340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073640.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1133 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1231 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g17320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0035s00031.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g31090 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1299 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00022658 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34000 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3698, BH05.3729, CH05.3916 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0393270, gene-QOZ80_5BG0441450 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0526320.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_001891 |
| Poaceae | Oryza coarctata | 1 | Oco23G008030 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g36170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G090800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0202781, Pt_Chr0505705, Pt_Chr0703794, Pt_Chr0703796 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G016670, Chr06G017330 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G762200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG068520, gene_TRIDC5BG073880 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G480000.2, TraesCS5B02G493100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb410230_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-49995, nbis-gene-49996 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25167 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.2225, evm.TU.LG16.285, evm.TU.LG17.1280 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g32360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.599 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16089 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15890 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-493 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.345 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007302 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13732 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3643 |
| Salicaceae | Populus euphratica | 3 | populus_peu08057, populus_peu19233, populus_peu22215 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604530 |
| Solanaceae | Solanum chilense | 1 | SOLCI005286600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007319 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9429 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1638 |
| Zosteraceae | Zostera marina | 2 | Zosma03g18550.v3.1, Zosma06g29710.v3.1 |