halophFGD

Basic Information

Locus ID: Ag9G01842

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: RING finger and CHY zinc finger domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	232302057	232306313	-	Ag9G01842

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.78	21,524.28 Da	51.66	55.72	-0.49

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05495	CHY zinc finger	18	98	6.9E-21	IPR008913
Pfam	PF14599	Zinc-ribbon	130	178	6.8E-21	IPR039512
SUPERFAMILY	SSF161219	CHY zinc finger-like	16	87	3.66E-19	IPR037274
SUPERFAMILY	SSF161245	Zinc hairpin stack	89	121	1.27E-8	IPR037275
Gene3D	G3DSA:2.20.28.10	-	145	182	3.2E-18	-
ProSiteProfiles	PS51266	Zinc finger CHY-type profile.	11	86	25.005335	IPR008913
ProSiteProfiles	PS51270	Zinc finger CTCHY-type profile.	88	152	16.776241	IPR017921

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K10144 (RING finger and CHY zinc finger domain-containing protein 1 [EC:2.3.2.27])

Pathway:

map04115 (p53 signaling pathway) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G18650.1	CHY-type/CTCHY-type/RING-type Zinc finger protein.
RefSeq	XP_017256705.1	PREDICTED: E3 ubiquitin-protein ligase MIEL1 [Daucus carota subsp. sativus]
Swiss-Prot	Q8VZK0	E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1
TrEMBL	A0A162B484	E3 ubiquitin-protein ligase MIEL1-like OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002449 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	17.727947	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.430565	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	22.610231	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	25.643826	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	23.841932	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	46.584229	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	23.905298	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	18.844826	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	96.895988	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	92.515778	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	94.530846	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	88.851738	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	72.185745	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	66.290756	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	47.745678	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	52.919323	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	46.429123	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	51.375534	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	56.324711	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	49.08234	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	45.517345	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	57.840027	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	70.021149	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	47.221233	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	62.170063	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	46.94701	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	51.631763	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	53.352867	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	53.839088	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	48.299988		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	39.761272		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	47.323944		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	113.862015		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	87.495026		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	116.142548		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	171.383423		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	72.018791		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	94.93895		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	96.053993	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	55.497223	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	43.842266	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	10.787151	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	124.226089	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	208.6996	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	244.973465	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	11.676089	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	175.281784	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	72.816803	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	83.996941	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	101.530861	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg12461, jg12462, jg14991, jg23835, jg32011, jg32649, jg7856 ... jg8857
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14341, gene_17830, gene_19626, gene_5164
Amaranthaceae	Atriplex hortensis	5	Ah020749, Ah020750, Ah029823, Ah031884, Ah037988
Amaranthaceae	Beta vulgaris	3	BVRB_2g043770, BVRB_7g164250, BVRB_9g205900
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg35667, Sbi_jg59768, Sbi_jg62797, Sbi_jg835
Amaranthaceae	Salicornia europaea	2	Seu_jg24048, Seu_jg3774
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00015814, GOSA_00024685, GOSA_00025587, GOSA_00026192
Amaranthaceae	Suaeda glauca	6	Sgl65769, Sgl70117, Sgl72291, Sgl75847, Sgl78387, Sgl80890
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000005474, gene:ENSEOMG00000012324 ... gene:ENSEOMG00000014399, gene:ENSEOMG00000017211, gene:ENSEOMG00000017784, gene:ENSEOMG00000030890, gene:ENSEOMG00000037916, gene:ENSEOMG00000038296, gene:ENSEOMG00000039840, gene:ENSEOMG00000042902, gene:ENSEOMG00000044447, gene:ENSEOMG00000049325, gene:ENSEOMG00000050795
Amaranthaceae	Chenopodium quinoa	8	CQ.Regalona.r1.2AG0001610, CQ.Regalona.r1.2BG0002630 ... CQ.Regalona.r1.3AG0016030, CQ.Regalona.r1.3BG0018760, CQ.Regalona.r1.7AG0014320, CQ.Regalona.r1.7BG0015890, CQ.Regalona.r1.9AG0003800, CQ.Regalona.r1.9BG0018510
Anacardiaceae	Pistacia vera	5	pistato.v30009890, pistato.v30057920, pistato.v30238630 ... pistato.v30253170, pistato.v30273620
Apiaceae	Apium graveolens	2	Ag9G01842, Ag9G02216
Arecaceae	Cocos nucifera	4	COCNU_07G009700, COCNU_10G007340, COCNU_12G001920 ... COCNU_16G003070
Arecaceae	Phoenix dactylifera	5	gene-LOC103711728, gene-LOC103715386, gene-LOC103717825 ... gene-LOC103719983, gene-LOC103720768
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.313.V1.1, AsparagusV1_07.973.V1.1 ... AsparagusV1_08.3122.V1.1
Asteraceae	Flaveria trinervia	5	Ftri10G14779, Ftri12G13606, Ftri13G14362, Ftri13G15259 ... Ftri14G03172
Brassicaceae	Arabidopsis thaliana	4	AT3G62970.1, AT5G18650.1, AT5G22920.1, AT5G25560.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10004654m.g.v1.0, Thhalv10006143m.g.v1.0 ... Thhalv10014246m.g.v1.0, Thhalv10014400m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp2g21970.v2.2, Sp5g00550.v2.2, Sp6g22470.v2.2 ... Sp6g25690.v2.2
Brassicaceae	Brassica nigra	6	BniB02g044110.2N, BniB04g004000.2N, BniB05g045050.2N ... BniB08g009410.2N, BniB08g011440.2N, BniB08g076970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq04G2244, Ceq05G0675, Ceq08G1387, Ceq09G1204
Casuarinaceae	Casuarina glauca	4	Cgl04G2441, Cgl05G0686, Cgl08G1426, Cgl09G1295
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g05460, gene.Cymno10g01020
Dunaliellaceae	Dunaliella salina	1	Dusal.0056s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g27550, gene.Thate08g23780
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-12136, nbisL1-mrna-2960, nbisL1-mrna-4159
Nitrariaceae	Nitraria sibirica	5	evm.TU.LG04.278, evm.TU.LG07.1370, evm.TU.LG09.826 ... evm.TU.LG11.1352, evm.TU.LG11.1353
Plantaginaceae	Plantago ovata	5	Pov_00008226, Pov_00013683, Pov_00026187, Pov_00026188 ... Pov_00026456
Plumbaginaceae	Limonium bicolor	4	Lb0G38004, Lb2G11611, Lb4G23616, Lb4G23628
Poaceae	Echinochloa crus-galli	14	AH01.2025, AH01.3642, AH01.4976, AH02.2997, AH05.3665 ... BH01.2192, BH01.3988, BH02.3076, BH05.3682, CH01.2286, CH01.4259, CH01.5518, CH02.3447, CH05.3870
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_1AG0031290, gene-QOZ80_1BG0081260 ... gene-QOZ80_2AG0126660, gene-QOZ80_2BG0182270, gene-QOZ80_3AG0233570, gene-QOZ80_3AG0248180, gene-QOZ80_3BG0280100, gene-QOZ80_3BG0294370, gene-QOZ80_5AG0392940, gene-QOZ80_5BG0441210
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0039840.1, HORVU.MOREX.r3.3HG0285310.1 ... HORVU.MOREX.r3.4HG0340200.1, HORVU.MOREX.r3.5HG0445970.1
Poaceae	Lolium multiflorum	4	gene-QYE76_002032, gene-QYE76_054960, gene-QYE76_067912 ... gene-QYE76_067913
Poaceae	Oryza coarctata	7	Oco02G019340, Oco06G002780, Oco06G012950, Oco19G005290 ... Oco20G005200, Oco23G007820, Oco24G007430
Poaceae	Oryza sativa	5	LOC_Os01g52110.1, LOC_Os03g05270.1, LOC_Os03g22680.1 ... LOC_Os10g31850.1, LOC_Os12g35320.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G216100, gene-BS78_01G355300 ... gene-BS78_01G482300, gene-BS78_03G257900, gene-BS78_08G088300
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0102718, Pt_Chr0102719, Pt_Chr0502483, Pt_Chr0502502 ... Pt_Chr0600645, Pt_Chr0703749
Poaceae	Sporobolus alterniflorus	12	Chr01G037340, Chr02G011150, Chr03G015050, Chr04G011320 ... Chr05G022540, Chr06G013530, Chr07G010710, Chr08G015140, Chr0G030720, Chr12G002040, Chr19G009700, Chr27G006730
Poaceae	Thinopyrum elongatum	4	Tel1E01G266400, Tel3E01G473000, Tel4E01G108000 ... Tel5E01G184600
Poaceae	Triticum dicoccoides	8	gene_TRIDC1AG021680, gene_TRIDC1BG025800 ... gene_TRIDC3AG042640, gene_TRIDC3BG048570, gene_TRIDC4AG039130, gene_TRIDC4BG010160, gene_TRIDC5AG015040, gene_TRIDC5BG016710
Poaceae	Triticum aestivum	12	TraesCS1A02G143300.2, TraesCS1B02G159900.1 ... TraesCS1D02G142100.1, TraesCS3A02G288900.2, TraesCS3B02G323600.1, TraesCS3D02G288700.1, TraesCS4A02G249200.1, TraesCS4B02G065500.1, TraesCS4D02G064500.2, TraesCS5A02G095000.2, TraesCS5B02G101200.1, TraesCS5D02G107600.1
Poaceae	Zea mays	4	Zm00001eb003700_P001, Zm00001eb046740_P002 ... Zm00001eb154580_P001, Zm00001eb410510_P001
Poaceae	Zoysia japonica	5	nbis-gene-12757, nbis-gene-1588, nbis-gene-21256 ... nbis-gene-21258, nbis-gene-30258
Poaceae	Zoysia macrostachya	4	Zma_g13335, Zma_g2077, Zma_g25933, Zma_g8538
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.169, evm.TU.LG03.2069, evm.TU.LG03.2546 ... evm.TU.LG03.783, evm.TU.LG04.584, evm.TU.LG12.943, evm.TU.LG14.367, evm.TU.LG17.1588
Posidoniaceae	Posidonia oceanica	2	gene.Posoc01g10240, gene.Posoc06g02940
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_16_RagTag.722, evm.TU.Scaffold_1_RagTag.1510 ... evm.TU.Scaffold_6_RagTag.637
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-16049, nbisL1-mrna-21376, nbisL1-mrna-24892 ... nbisL1-mrna-6086
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-19267, nbisL1-mrna-2707, nbisL1-mrna-7272
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19126, nbisL1-mrna-531
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000003l.563, evm.TU.utg000011l.378 ... evm.TU.utg000016l.511, evm.TU.utg000022l.130
Rhizophoraceae	Kandelia obovata	4	Maker00007941, Maker00009921, Maker00016114, Maker00017319
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-134, nbisL1-mrna-13698, nbisL1-mrna-7685
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-10388, nbisL1-mrna-3600, nbisL1-mrna-385 ... nbisL1-mrna-5205
Salicaceae	Populus euphratica	8	populus_peu07893, populus_peu07899, populus_peu11637 ... populus_peu12809, populus_peu12810, populus_peu27209, populus_peu29917, populus_peu35373
Solanaceae	Lycium barbarum	7	gene-LOC132607133, gene-LOC132607134, gene-LOC132608435 ... gene-LOC132626827, gene-LOC132629980, gene-LOC132635689, gene-LOC132641963
Solanaceae	Solanum chilense	4	SOLCI001287100, SOLCI004433900, SOLCI004831200 ... SOLCI005054700
Solanaceae	Solanum pennellii	5	gene-LOC107020988, gene-LOC107023678, gene-LOC107027381 ... gene-LOC107028365, gene-LOC107029351
Tamaricaceae	Reaumuria soongarica	3	STRG.2785_chr02_+, gene_3800, gene_4515
Tamaricaceae	Tamarix chinensis	3	TC01G1663, TC02G1945, TC12G1592
Zosteraceae	Zostera marina	1	Zosma01g20380.v3.1