Basic Information
Locus ID:
Ag9G01836
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 232224005 | 232226552 | - | Ag9G01836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 30,259.39 Da | 36.53 | 86.97 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 96 | 6.54E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 100 | 5.9E-7 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15563.7 | - | 0 |
| RefSeq | XP_017256713.1 | PREDICTED: uncharacterized protein LOC108226276 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166H6N0 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002444 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 12.505111 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 14.233967 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 15.665021 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.534346 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 16.656393 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 19.496662 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 12.962085 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 14.014655 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 7.839764 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.7998 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.84365 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.749169 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 21.391491 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.271978 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.417833 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 6.649308 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 7.316792 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 10.003747 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.832495 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 9.281768 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 11.287312 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 9.94026 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 10.095791 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.988873 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 8.781116 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 8.052686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.618829 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 9.671296 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.827261 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 6.511424 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 4.696124 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 4.063809 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.966756 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 13.177866 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.19845 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 6.582508 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 6.730929 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 5.029967 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.956399 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.691863 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 4.294515 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.703173 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 21.588095 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 33.738964 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.051405 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 9.622628 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 25.853855 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 33.435673 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 24.363058 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 21.216513 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27990 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18755 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020774 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59763, Sbi_jg62804 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg24042 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016196, gene:ENSEOMG00000019870 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0016180 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30238500 |
| Apiaceae | Apium graveolens | 1 | Ag9G01836 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G003020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113463024 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G05983 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15563.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026419m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g020630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1212 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g04830, gene.Cymno05g04840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0564s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g27520 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1358 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026195 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04310, Lb2G11585 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2699, BH05.2795, CH05.2881 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0375690, gene-QOZ80_5BG0423010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0059840.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_018307 |
| Poaceae | Oryza coarctata | 2 | Oco09G007990, Oco10G008230 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g30920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G122800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0505279, Pt_Chr0505311 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G021770, Chr12G016170 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G391200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG035600, gene_TRIDC1BG040700 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G236400.1, TraesCS1B02G247300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb285420_P001, Zm00001eb351020_P003 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-38763, nbis-gene-54394 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g28106 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2077, evm.TU.LG14.376 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g10310 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1424 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.885 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012624 |
| Salicaceae | Populus euphratica | 2 | populus_peu07888, populus_peu07905 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132626822 |
| Solanaceae | Solanum chilense | 1 | SOLCI002677500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012873 |
| Zosteraceae | Zostera marina | 2 | Zosma03g14710.v3.1, Zosma03g14720.v3.1 |