Basic Information
Locus ID:
Ag9G01677
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 216021001 | 216022920 | - | Ag9G01677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 28,312.14 Da | 34.07 | 71.52 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 20 | 85 | 1.7E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 136 | 2.6E-9 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017218275.1 | PREDICTED: uncharacterized protein LOC108195820 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166H256 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002284 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.361945 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 12.116926 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 22.724957 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 22.562693 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.973881 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 25.258986 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 37.498608 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 32.962242 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 6.046932 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.479014 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.136075 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 4.178829 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 5.379 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.515892 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.934481 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.790611 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.441127 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.328951 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 3.482227 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 5.472441 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.651629 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 13.303458 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.318419 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.882054 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.165243 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.43817 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.927853 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 5.904861 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 4.777269 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.238236 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.870866 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.556008 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 2.380854 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 5.097417 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.408652 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.349863 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.85504 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 3.445212 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.313555 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.291857 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.221285 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 11.265049 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 6.016398 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 16.356165 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 11.83785 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 13.790979 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.536405 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 6.784533 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 6.171246 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 6.936977 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg11040, jg5839, jg5840 |
| Aizoaceae | Mesembryanthemum crystallinum | 6 | gene_14858, gene_14859, gene_14860, gene_14861, gene_14862 ... |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021062 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016074 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl03107, Sgl08231 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011489, gene:ENSEOMG00000029996 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0017830, CQ.Regalona.r1.3BG0018410 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30101480, pistato.v30240410 |
| Apiaceae | Apium graveolens | 1 | Ag9G01677 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009230 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.255.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri12G15266, Ftri12G23975, Ftri6G23149 |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2045, Ceq07G0201 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G2223, Cgl01G2245, Cgl07G0198 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g17860 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.730 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00025145, Pov_00025146, Pov_00034238 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G12113, Lb3G15954 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1853, BH01.2167, CH01.2263 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0126930, gene-QOZ80_2BG0182500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0040550.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052959 |
| Poaceae | Oryza coarctata | 2 | Oco19G005430, Oco20G005360 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g40010.1, LOC_Os07g07520.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G213300 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr06G013350 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G273100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG022030, gene_TRIDC1BG026060 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G144700.2, TraesCS1B02G162000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb222310_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19277, nbis-gene-19278 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16147 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.995, evm.TU.LG21.658 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1332, evm.TU.Scaffold_6_RagTag.940 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-15734, nbisL1-mrna-1650, nbisL1-mrna-29648 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12462, nbisL1-mrna-15592 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-2586, nbisL1-mrna-809 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.586, evm.TU.utg000019l.439 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002341, Maker00007918 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12216, nbisL1-mrna-15176 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18162, nbisL1-mrna-4332 |
| Salicaceae | Populus euphratica | 2 | populus_peu07609, populus_peu21642 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132608734 |
| Solanaceae | Solanum chilense | 1 | SOLCI005009900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029218 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_7681, gene_7682 |