halophFGD

Basic Information

Locus ID: Ag9G01665

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Galactinol--sucrose galactosyltransferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	214521843	214526044	-	Ag9G01665

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.79	88,157.95 Da	37.32	81.71	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05691	Raffinose synthase or seed imbibition protein Sip1	70	781	8.5E-249	IPR008811
SUPERFAMILY	SSF51445	(Trans)glycosidases	239	574	9.03E-46	IPR017853
Gene3D	G3DSA:3.20.20.70	Aldolase class I	240	563	4.4E-9	IPR013785

Gene Ontology

Molecular Function:

GO:0003824 (catalytic activity)

KEGG Pathway

KO Term:

K06617 (raffinose synthase [EC:2.4.1.82])

Pathway:

ko00052 (Galactose metabolism) map00052 (Galactose metabolism)

Reaction:

R02411 (alpha-D-Galactosyl-(1->3)-1D-myo-inositol + Sucrose <=> myo-Inositol + Raffinose)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G57520.1	seed imbibition 2.
RefSeq	XP_017230127.1	PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Daucus carota subsp. sativus]
Swiss-Prot	Q94A08	Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2
TrEMBL	A0A166H196	galactinol--sucrose galactosyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002254 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	5.833018	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	2.934148	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.502138	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0.709017	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.615122	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	35.375149	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	32.887436	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	33.115952	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	28.144733	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	34.117828	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	31.470682	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.794602	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	8.724397	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.660464	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	23.773298	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	29.938156	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	11.570088	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	15.987226	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	8.319922	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	8.513548	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.873941	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	11.229545	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	33.702736	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	20.086361	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	29.291576	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	23.975792	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.09936		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	17.58354		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	11.401353		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.426054		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	5.850792		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	3.29118		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.176889		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.364866		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	5.09145		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	76.49749	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	60.486477	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	72.133163	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.54857	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.290493	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.138786	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.405402	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.283345	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.532717	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	11.765734	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	6.5646	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	5.060652	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	11	jg13005, jg15918, jg20220, jg21652, jg24729, jg25953, jg4347 ... jg25954, jg25955, jg31323, jg31719
Aizoaceae	Mesembryanthemum crystallinum	4	gene_10612, gene_4662, gene_6543, gene_7097
Amaranthaceae	Atriplex hortensis	4	Ah012149, Ah014296, Ah021790, Ah028454
Amaranthaceae	Beta vulgaris	2	BVRB_4g091140, BVRB_8g193750
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg25613, Sbi_jg59305, Sbi_jg63318, Sbi_jg63320 ... Sbi_jg9415
Amaranthaceae	Salicornia europaea	2	Seu_jg19186, Seu_jg23558
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00011007, GOSA_00011796, GOSA_00018392
Amaranthaceae	Suaeda glauca	6	Sgl02689, Sgl07846, Sgl41975, Sgl46754, Sgl73986, Sgl77491
Amaranthaceae	Chenopodium album	13	gene:ENSEOMG00000007574, gene:ENSEOMG00000008622 ... gene:ENSEOMG00000011588, gene:ENSEOMG00000015898, gene:ENSEOMG00000027190, gene:ENSEOMG00000028129, gene:ENSEOMG00000029810, gene:ENSEOMG00000031009, gene:ENSEOMG00000038257, gene:ENSEOMG00000041530, gene:ENSEOMG00000042735, gene:ENSEOMG00000043996, gene:ENSEOMG00000044899
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.2BG0000160, CQ.Regalona.r1.3AG0020950 ... CQ.Regalona.r1.3BG0021740, CQ.Regalona.r1.4BG0026710, CQ.Regalona.r1.8AG0022410, CQ.Regalona.r1.8BG0020040, CQ.Regalona.r1.9BG0008960
Anacardiaceae	Pistacia vera	5	pistato.v30066290, pistato.v30140310, pistato.v30151430 ... pistato.v30186800, pistato.v30261430
Apiaceae	Apium graveolens	6	Ag10G01908, Ag10G02359, Ag3G01424, Ag3G01427, Ag3G02424 ... Ag9G01665
Arecaceae	Cocos nucifera	6	COCNU_01G013120, COCNU_01G013130, COCNU_01G018610 ... COCNU_06G014630, COCNU_11G006220, scaffold016239G000090
Arecaceae	Phoenix dactylifera	6	gene-LOC103695985, gene-LOC103697917, gene-LOC103710671 ... gene-LOC103717145, gene-LOC103719535, gene-LOC103722267
Asparagaceae	Asparagus officinalis	3	AsparagusV1_03.1041.V1.1, AsparagusV1_03.3143.V1.1 ... AsparagusV1_05.2168.V1.1
Asteraceae	Flaveria trinervia	3	Ftri11G24315, Ftri16G31353, Ftri4G09690
Brassicaceae	Arabidopsis thaliana	3	AT1G55740.1, AT3G57520.1, AT5G20250.4
Brassicaceae	Eutrema salsugineum	2	Thhalv10005800m.g.v1.0, Thhalv10012821m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g05070.v2.2, Sp6g24160.v2.2
Brassicaceae	Brassica nigra	4	BniB02g042510.2N, BniB05g043160.2N, BniB07g000660.2N ... BniB08g072230.2N
Casuarinaceae	Casuarina equisetifolia	5	Ceq01G1553, Ceq01G1865, Ceq02G1432, Ceq04G1077, Ceq06G0584
Casuarinaceae	Casuarina glauca	5	Cgl01G1715, Cgl01G2032, Cgl01G2033, Cgl04G1224, Cgl06G0603
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno04g07060, gene.Cymno13g01960
Dunaliellaceae	Dunaliella salina	2	Dusal.0013s00029.v1.0, Dusal.0013s00030.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g18460
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG01.2477, evm.TU.LG05.2102, evm.TU.LG07.641 ... evm.TU.LG10.986
Plantaginaceae	Plantago ovata	7	Pov_00001170, Pov_00006660, Pov_00012335, Pov_00015525 ... Pov_00019672, Pov_00037986, Pov_00037994
Plumbaginaceae	Limonium bicolor	14	Lb0G37484, Lb0G37581, Lb0G37896, Lb0G38217, Lb1G03833 ... Lb2G11778, Lb2G11779, Lb2G11780, Lb2G11781, Lb2G11786, Lb2G11787, Lb2G14035, Lb5G27305, Lb5G29575
Poaceae	Echinochloa crus-galli	21	AH01.311, AH03.586, AH05.3182, AH06.1102, AH06.408, AH06.410 ... AH08.1925, AH09.1322, BH01.413, BH03.700, BH06.531, BH06.532, BH08.2016, BH09.1501, CH01.266, CH03.797, CH06.536, CH06.537, CH08.2200, CH09.1612, CH09.2111
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_3AG0211410, gene-QOZ80_3BG0256540 ... gene-QOZ80_4BG0344500, gene-QOZ80_6AG0510530, gene-QOZ80_6BG0462650, gene-QOZ80_8AG0635630, gene-QOZ80_8BG0664440
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.2HG0176000.1, HORVU.MOREX.r3.3HG0237880.1 ... HORVU.MOREX.r3.7HG0656670.2, HORVU.MOREX.r3.7HG0677770.1
Poaceae	Lolium multiflorum	6	gene-QYE76_028371, gene-QYE76_029809, gene-QYE76_029810 ... gene-QYE76_042165, gene-QYE76_044583, gene-QYE76_049048
Poaceae	Oryza coarctata	9	Oco05G026760, Oco06G027750, Oco07G008740, Oco11G003360 ... Oco12G003360, Oco13G003740, Oco14G004150, Oco15G011850, Oco16G010720
Poaceae	Oryza sativa	5	LOC_Os03g59430.2, LOC_Os04g40520.1, LOC_Os06g07600.1 ... LOC_Os07g10840.1, LOC_Os08g38710.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G040000, gene-BS78_02G101000 ... gene-BS78_06G136400, gene-BS78_07G176100, gene-BS78_10G059400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0302342, Pt_Chr0303853, Pt_Chr0303866, Pt_Chr0307136 ... Pt_Chr0404010, Pt_Chr0405349, Pt_Chr0405384
Poaceae	Sporobolus alterniflorus	7	Chr07G030050, Chr14G002580, Chr16G016450, Chr17G015880 ... Chr21G001720, Chr25G009200, Chr30G009080
Poaceae	Thinopyrum elongatum	4	Tel2E01G589900, Tel3E01G195800, Tel6E01G517500 ... Tel7E01G424200
Poaceae	Triticum dicoccoides	8	gene_TRIDC2AG049340, gene_TRIDC2BG052090 ... gene_TRIDC3AG014110, gene_TRIDC3BG018680, gene_TRIDC7AG015830, gene_TRIDC7AG030480, gene_TRIDC7BG005200, gene_TRIDC7BG021330
Poaceae	Triticum aestivum	12	TraesCS2A02G324700.1, TraesCS2B02G357600.2 ... TraesCS2D02G338200.2, TraesCS3A02G113900.2, TraesCS3B02G133400.1, TraesCS3D02G116400.1, TraesCS7A02G134100.1, TraesCS7A02G236500.1, TraesCS7B02G035200.2, TraesCS7B02G134600.1, TraesCS7D02G133500.2, TraesCS7D02G236700.1
Poaceae	Zea mays	8	Zm00001eb033870_P001, Zm00001eb033880_P001 ... Zm00001eb061880_P002, Zm00001eb079430_P001, Zm00001eb079440_P001, Zm00001eb079460_P001, Zm00001eb281720_P002, Zm00001eb303190_P001
Poaceae	Zoysia japonica	5	nbis-gene-15434, nbis-gene-17343, nbis-gene-34827 ... nbis-gene-34829, nbis-gene-7391
Poaceae	Zoysia macrostachya	5	Zma_g21473, Zma_g220, Zma_g24302, Zma_g31434, Zma_g6177
Portulacaceae	Portulaca oleracea	8	evm.TU.LG02.663, evm.TU.LG03.1116, evm.TU.LG07.500 ... evm.TU.LG09.1828, evm.TU.LG12.613, evm.TU.LG15.438, evm.TU.LG16.1616, evm.TU.LG26.51
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g07120, gene.Posoc01g16380, gene.Posoc03g05310 ... gene.Posoc10g04390
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_1_RagTag.1179, evm.TU.Scaffold_4_RagTag.2283 ... evm.TU.Scaffold_8_RagTag.1674
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-20073, nbisL1-mrna-6440, nbisL1-mrna-8562 ... nbisL1-mrna-8621
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-3336, nbisL1-mrna-4430, nbisL1-mrna-6613
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15028, nbisL1-mrna-18833, nbisL1-mrna-5029
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000008l.90, evm.TU.utg000008l.1340 ... evm.TU.utg000009l.531, evm.TU.utg000018l.15
Rhizophoraceae	Kandelia obovata	3	Maker00001228, Maker00003375, Maker00006018
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-10981, nbisL1-mrna-12435, nbisL1-mrna-1842 ... nbisL1-mrna-9356
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13377, nbisL1-mrna-22313, nbisL1-mrna-23731 ... nbisL1-mrna-5565
Salicaceae	Populus euphratica	8	populus_peu05730, populus_peu10968, populus_peu11104 ... populus_peu17109, populus_peu26111, populus_peu26560, populus_peu26561, populus_peu28757
Solanaceae	Lycium barbarum	3	gene-LOC132603137, gene-LOC132617021, gene-LOC132635303
Solanaceae	Solanum chilense	1	SOLCI000371300
Solanaceae	Solanum pennellii	3	gene-LOC107014380, gene-LOC107025889, gene-LOC107026434
Tamaricaceae	Reaumuria soongarica	3	gene_17901, gene_5154, gene_8082
Tamaricaceae	Tamarix chinensis	4	TC06G0580, TC06G2445, TC08G2555, TC10G1254
Zosteraceae	Zostera marina	2	Zosma03g29000.v3.1, Zosma06g18360.v3.1