Basic Information
Locus ID:
Ag9G01629
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
AGC2-1
Description:
Serine/Threonine protein kinases, catalytic domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 209382812 | 209384439 | - | Ag9G01629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 42,127.16 Da | 31.31 | 92.97 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 226 | 324 | 3.4E-21 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 18 | 173 | 1.8E-27 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 12 | 359 | 4.32E-68 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 225 | 355 | 3.7E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 103 | 174 | 7.8E-36 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 16 | 102 | 7.8E-36 | - |
| SMART | SM00220 | serkin_6 | 16 | 324 | 1.6E-63 | IPR000719 |
| ProSiteProfiles | PS51285 | AGC-kinase C-terminal domain profile. | 325 | 371 | 9.149817 | IPR000961 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 16 | 324 | 40.937023 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 140 | 152 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G13000.1 | AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein. | 0 |
| RefSeq | XP_016433698.1 | PREDICTED: serine/threonine-protein kinase OXI1-like [Nicotiana tabacum] | 0 |
| Q9LSF1 | Serine/threonine-protein kinase OXI1 OS=Arabidopsis thaliana OX=3702 GN=OXI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5BLL1 | Protein kinase domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_021696 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 33.168575 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 46.49609 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 48.385799 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 49.206726 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 46.030155 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 33.033978 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 56.094101 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 17.869085 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 12.473336 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 14.293283 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 13.232622 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 15.932124 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 46.768795 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 41.910572 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.946496 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.924186 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.564514 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.201572 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.301022 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.931657 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.776702 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.14802 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.537997 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.458998 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.861076 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.556872 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.860854 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.286363 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.363136 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.237402 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.258684 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.408817 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.048963 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.048346 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.766924 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.393239 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.309604 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.619558 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.718517 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.118459 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.594343 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.070347 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.336254 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.738875 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 3.811983 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.7866 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 11.21933 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 5.567189 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg36076, jg37740, jg8078 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6515 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028393 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g062740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26636, Sbi_jg33926 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15152 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011839 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73942, Sgl77449 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000004855, gene:ENSEOMG00000038128 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0009340, CQ.Regalona.r1.9BG0009570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30013820 |
| Apiaceae | Apium graveolens | 2 | Ag11G03078, Ag9G01629 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012880, scaffold008808G000060 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708546, gene-LOC103717538 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G09260, Ftri15G21140, Ftri3G14544, Ftri9G03192 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G25250.1, AT4G13000.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002544m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g22900.v2.2, Sp7g10060.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g034800.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1532 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1562 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g04860 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate01g15310, gene.Thate01g25840, gene.Thate05g10830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6411 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1440 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036567 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23899, Lb5G28745 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1378, BH09.1559, CH09.1679 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0192000, gene-QOZ80_4AG0312830 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0177320.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_023516, gene-QYE76_023517, gene-QYE76_037622 |
| Poaceae | Oryza coarctata | 4 | Oco03G014610, Oco04G015090, Oco07G009230, Oco08G009100 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g39090.1, LOC_Os04g41160.1, LOC_Os12g09630.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G187900, gene-BS78_06G141600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307185 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G007900, Chr15G009570, Chr23G010120, Chr25G009510 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G604500, Tel6E01G419500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG050220, gene_TRIDC2BG053480 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G347400.1, TraesCS2B02G365900.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb079000_P001, Zm00001eb187940_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-29722, nbis-gene-36935, nbis-gene-7343 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g13840, Zma_g19950, Zma_g21501 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.1030, evm.TU.LG18.701, evm.TU.LG26.326 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g15150 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1728, evm.TU.Scaffold_9_RagTag.1514 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12221, nbisL1-mrna-20687, nbisL1-mrna-20803 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12156, nbisL1-mrna-6006 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10798, nbisL1-mrna-21502 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.955, evm.TU.utg000006l.1001 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009308, Maker00013570 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10536, nbisL1-mrna-13939 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-15657, nbisL1-mrna-4573 |
| Salicaceae | Populus euphratica | 1 | populus_peu30855 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609835 |
| Solanaceae | Solanum chilense | 1 | SOLCI006976100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107030613 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16512 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2551 |
| Zosteraceae | Zostera marina | 2 | Zosma04g17560.v3.1, Zosma05g07070.v3.1 |