Basic Information
Locus ID:
Ag9G01626
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 209358455 | 209360859 | - | Ag9G01626 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 43,772.28 Da | 47.19 | 100.03 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 164 | 187 | 0.019 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 267 | 288 | 1.2 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 49 | 4.74E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 46 | 368 | 8.24E-31 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 53 | 374 | 2.2E-49 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 51 | 8.3E-8 | - |
| SMART | SM00367 | LRR_CC_2 | 343 | 368 | 110.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 113 | 138 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 164 | 189 | 7.7E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 265 | 290 | 0.44 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 190 | 219 | 17.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 317 | 342 | 3.1 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 87 | 112 | 5.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 139 | 163 | 11.0 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07550.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_017219946.1 | PREDICTED: F-box/LRR-repeat protein 12 [Daucus carota subsp. sativus] | 0 |
| Q9SRR1 | F-box/LRR-repeat protein 12 OS=Arabidopsis thaliana OX=3702 GN=FBL12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BQ23 | Putative F-box/LRR-repeat protein 12 OS=Davidia involucrata OX=16924 GN=Din_038644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.97084 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.086663 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 3.259918 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 2.544894 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.161613 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 4.039128 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 3.050982 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 2.957657 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 5.758081 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 5.161839 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 6.581904 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 5.018188 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 4.974167 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.780966 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.506706 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.506416 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.84095 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 3.146461 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.637425 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.953199 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 2.8924 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.81203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.425098 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 3.177511 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.564303 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.653261 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.296372 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.417208 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.394047 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.163224 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 3.722568 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.978189 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 9.814708 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.105421 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 8.29369 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 5.739047 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.656598 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.16253 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.003121 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 3.533698 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 2.833639 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 2.384142 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.422723 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 7.522007 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.824055 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.181466 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.049731 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 5.020429 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.570125 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.044852 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16746 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13578 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000265 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g119130 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30704, Sbi_jg58568 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg28427 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004993 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55038, Sgl60294 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007060, gene:ENSEOMG00000020144 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0024680 |
| Apiaceae | Apium graveolens | 1 | Ag9G01626 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714985 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.504.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G11816 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G07550.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020882m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g06470.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g056400.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g02140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g11670 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.2347, evm.TU.LG04.2348 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036649 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23814, Lb4G23861 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0677150, gene-QOZ80_9BG0700830 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0343680.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064021 |
| Poaceae | Oryza coarctata | 2 | Oco21G004040, Oco22G004890 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g16280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G110700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104026 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G019520, Chr31G002450 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G135500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG036440, gene_TRIDC4BG013290 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G230600.2, TraesCS4B02G085300.2 ... |
| Poaceae | Zea mays | 5 | Zm00001eb048880_P001, Zm00001eb112540_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-54580 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17701, Zma_g17702 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2365, evm.TU.LG14.1535, evm.TU.LG14.1536 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g06060 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1682, evm.TU.Scaffold_9_RagTag.1478 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20632 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21469 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.929 |
| Rhizophoraceae | Rhizophora apiculata | 9 | nbisL1-mrna-13915, nbisL1-mrna-18050, nbisL1-mrna-19630 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9058 |
| Salicaceae | Populus euphratica | 3 | populus_peu24252, populus_peu24264, populus_peu26825 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132605746, gene-LOC132605747 |
| Solanaceae | Solanum chilense | 1 | SOLCI005888300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023118 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2293_chr01_-, gene_16489 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0898 |