Basic Information
Locus ID:
Ag9G01593
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
zinc-finger of acetyl-transferase ESCO
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 204168204 | 204171311 | - | Ag9G01593 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 39,979.21 Da | 45.04 | 82.58 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 268 | 312 | 0.00338406 | - |
| Pfam | PF13880 | ESCO1/2 acetyl-transferase | 283 | 350 | 2.4E-26 | IPR028009 |
| Pfam | PF13878 | zinc-finger of acetyl-transferase ESCO | 100 | 138 | 1.4E-14 | IPR028005 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 266 | 312 | 5.89E-5 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 95 | 333 | 1.4E-5 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31400.1 | damaged DNA binding;DNA-directed DNA polymerases. Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development. | 0 |
| RefSeq | XP_017239015.1 | PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Daucus carota subsp. sativus] | 0 |
| A7UL74 | Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Arabidopsis thaliana OX=3702 GN=CTF7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A165ZU03 | Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_009179 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.050309 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0.766993 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.883642 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 1.173077 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.797965 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0.578994 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.807514 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.174354 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.034066 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.231699 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.21891 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.423056 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.431938 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.255065 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.331526 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.31871 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.324182 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.676147 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.331725 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.868918 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.580229 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.34023 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3663 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2301 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah003180, Ah003185, Ah021316, Ah029263 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg23823, Sbi_jg7652 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12369 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00009236, GOSA_00018915 |
| Amaranthaceae | Suaeda glauca | 9 | Sgl31676, Sgl34133, Sgl34366, Sgl36981, Sgl39768, Sgl51173 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000020256, gene:ENSEOMG00000024375 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0010840, CQ.Regalona.r1.5BG0011410 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30276700 |
| Apiaceae | Apium graveolens | 1 | Ag9G01593 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G001210 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714315, gene-LOC113461139 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_04.736.V1.1, AsparagusV1_04.737.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G17439 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027115m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g085300.2N, BniB03g010480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0778 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0889 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g01780, gene.Cymno15g03630, gene.Cymno15g03640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0066s00014.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g37170, gene.Thate02g37180 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1637, evm.TU.LG01.603 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003690 |
| Plumbaginaceae | Limonium bicolor | 5 | Lb1G07830, Lb1G07833, Lb1G07834, Lb1G07846, Lb1G07848 |
| Poaceae | Echinochloa crus-galli | 2 | BH09.1641, CH09.1777 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0225410, gene-QOZ80_3BG0271080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0178750.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044876 |
| Poaceae | Oryza coarctata | 2 | Oco07G009790, Oco08G009570 |
| Poaceae | Oryza sativa | 2 | LOC_Os04g42120.1, LOC_Os05g31230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G149400 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0302232, Pt_Chr0302269, Pt_Chr0701199 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr25G010150, Chr26G010170, Chr30G009920 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G620300, Tel2E01G620400, Tel3E01G116700 ... |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG051500, gene_TRIDC2BG054640 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G355100.1, TraesCS2B02G373200.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb078390_P001, Zm00001eb078400_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-36993 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g19991 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1622, evm.TU.LG11.980 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g03400 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_13_RagTag.348, evm.TU.Scaffold_1_RagTag.1342 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4137, nbisL1-mrna-6257 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17030, nbisL1-mrna-18096 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-10153, nbisL1-mrna-10154, nbisL1-mrna-22923 ... |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.403 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016552 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-12523, nbisL1-mrna-7576 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13516, nbisL1-mrna-5697 |
| Salicaceae | Populus euphratica | 3 | populus_peu25938, populus_peu25939, populus_peu25950 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599228 |
| Solanaceae | Solanum chilense | 1 | SOLCI002682200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107013038, gene-LOC107015578 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9912 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G0822 |
| Zosteraceae | Zostera marina | 2 | Zosma05g03870.v3.1, Zosma06g23760.v3.1 |