halophFGD

Basic Information

Locus ID: Ag9G01580

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: DNA-directed RNA polymerase III subunit

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	201457381	201459710	-	Ag9G01580

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.78	28,120.33 Da	45.56	94.41	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05158	RNA polymerase Rpc34 subunit	31	122	9.8E-20	IPR007832
Pfam	PF05158	RNA polymerase Rpc34 subunit	127	235	3.5E-11	IPR007832
SUPERFAMILY	SSF46785	Winged helix DNA-binding domain	21	88	2.2E-9	IPR036390
Gene3D	G3DSA:1.10.10.10	-	24	87	1.3E-12	IPR036388

Gene Ontology

Biological Process:

GO:0006383 (transcription by RNA polymerase III)

Cellular Component:

GO:0005666 (RNA polymerase III complex)

KEGG Pathway

KO Term:

K03025 (DNA-directed RNA polymerase III subunit RPC6)

Pathway:

ko00230 (Purine metabolism) map00230 (Purine metabolism) ko00240 (Pyrimidine metabolism) map00240 (Pyrimidine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko03020 (RNA polymerase) map03020 (RNA polymerase) map04623 (Cytosolic DNA-sensing pathway)

Reaction:

R00435 (ATP + RNA <=> Diphosphate + RNA) R00441 (GTP + RNA <=> Diphosphate + RNA) R00442 (CTP + RNA <=> Diphosphate + RNA) R00443 (UTP + RNA <=> Diphosphate + RNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G23710.1	DNA binding;DNA-directed RNA polymerases.
RefSeq	XP_017241149.1	PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Daucus carota subsp. sativus]
TrEMBL	A0A166GZN5	DNA-directed RNA polymerase III subunit RPC6 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002196 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	6.438368	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	5.216026	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	5.179314	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	5.665783	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	4.015856	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	3.802637	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	2.93404	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	2.348344	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	6.758128	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	7.265815	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	9.333036	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	8.880802	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	7.180075	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	8.850259	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	4.208494	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	5.235245	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	5.436321	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	4.493494	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	5.207768	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	5.673525	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	4.604388	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	28.443636	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	25.701811	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	18.514585	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	14.204787	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.371326	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	11.857957	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	9.92752	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	12.300489	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	4.530969		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	4.519916		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	3.414996		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	4.653917		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	7.441005		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	5.676151		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	4.862088		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	3.835971		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.78769		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	5.32581	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	4.597585	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	6.287605	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	2.758034	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	2.490874	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	3.903435	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	6.031785	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	3.520344	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	7.82443	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	16.575184	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.025887	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.377499	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg36957, jg5577
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19264, gene_622
Amaranthaceae	Beta vulgaris	1	BVRB_5g121860
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg31325, Sbi_jg57961
Amaranthaceae	Salicornia europaea	1	Seu_jg25586
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00004474
Amaranthaceae	Suaeda glauca	2	Sgl54529, Sgl59870
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000006201, gene:ENSEOMG00000021214 ... gene:ENSEOMG00000023247
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.4AG0009560, CQ.Regalona.r1.5BG0028630
Anacardiaceae	Pistacia vera	1	pistato.v30127940
Apiaceae	Apium graveolens	2	Ag1G01146, Ag9G01580
Arecaceae	Cocos nucifera	2	scaffold010820G000020, scaffold012968G000010
Arecaceae	Phoenix dactylifera	1	gene-LOC103724044
Asparagaceae	Asparagus officinalis	1	AsparagusV1_09.1360.V1.1
Asteraceae	Flaveria trinervia	1	Ftri14G23041
Brassicaceae	Arabidopsis thaliana	1	AT5G23710.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10005351m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp2g23520.v2.2
Brassicaceae	Brassica nigra	2	BniB02g076810.2N, BniB07g040580.2N
Casuarinaceae	Casuarina glauca	1	Cgl02G0311
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g12140
Dunaliellaceae	Dunaliella salina	1	Dusal.0099s00005.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g21500
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.463
Plantaginaceae	Plantago ovata	2	Pov_00003140, Pov_00013573
Poaceae	Echinochloa crus-galli	6	AH06.2225, AH06.2226, BH06.2009, BH06.2010, CH06.2249 ... CH06.2250
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_6BG0497900
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.7HG0719600.1.CDS1 ... HORVU.MOREX.r3.7HG0719610.1.CDS1, HORVU.MOREX.r3.7HG0719640.1
Poaceae	Lolium multiflorum	1	gene-QYE76_034960
Poaceae	Oryza coarctata	1	Oco12G012520
Poaceae	Oryza sativa	1	LOC_Os06g40110.1
Poaceae	Paspalum vaginatum	2	gene-BS78_10G184000, gene-BS78_10G184400
Poaceae	Sporobolus alterniflorus	3	Chr02G029820, Chr05G007490, Chr0G008060
Poaceae	Thinopyrum elongatum	2	Tel7E01G637700, Tel7E01G637800
Poaceae	Triticum dicoccoides	3	gene_TRIDC7AG052520, gene_TRIDC7BG044950 ... gene_TRIDC7BG044960
Poaceae	Triticum aestivum	4	TraesCS7A02G376000.1, TraesCS7A02G376100.1 ... TraesCS7B02G277600.1.cds1, TraesCS7D02G372500.1.cds1
Poaceae	Zea mays	3	Zm00001eb276730_P001, Zm00001eb356740_P001 ... Zm00001eb386260_P001
Poaceae	Zoysia japonica	1	nbis-gene-10090
Poaceae	Zoysia macrostachya	1	Zma_g30783
Portulacaceae	Portulaca oleracea	1	evm.TU.LG09.1261
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g03170, gene.Posoc05g03210
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.1182
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14684, nbisL1-mrna-6818
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14849
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-21751
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000004l.134
Rhizophoraceae	Kandelia obovata	1	Maker00004087
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-16335
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-21384
Salicaceae	Populus euphratica	5	populus_peu04478, populus_peu04517, populus_peu04536 ... populus_peu12129, populus_peu35292
Solanaceae	Lycium barbarum	3	gene-LOC132602065, gene-LOC132610636, gene-LOC132621960
Solanaceae	Solanum chilense	1	SOLCI001877000
Solanaceae	Solanum pennellii	1	gene-LOC107026877
Tamaricaceae	Reaumuria soongarica	2	STRG.19266_chr07_-, gene_16144
Tamaricaceae	Tamarix chinensis	2	TC05G1029, TC09G0526
Zosteraceae	Zostera marina	1	Zosma05g05360.v3.1