Basic Information
Locus ID:
Ag9G01569
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 200593772 | 200599872 | + | Ag9G01569 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 20,255.71 Da | 56.65 | 95.89 | -0.47 |
Protein Domain:
Gene Ontology
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19350.1 | embryo defective 3006. | 0 |
| RefSeq | XP_017215131.1 | PREDICTED: uncharacterized protein LOC108193095 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A834ZW91 | Nnf1 OS=Tetracentron sinense OX=13715 GN=HHK36_000877 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 4.990945 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 3.513001 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1.764479 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 1.262512 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 1.95315 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1.895042 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 1.166567 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.729946 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 13.643676 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.838576 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 12.273719 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 10.235627 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 11.07319 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 9.513476 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.751204 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 4.785904 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 5.450476 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 5.692841 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.225929 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.653722 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 3.522412 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.500845 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 5.425283 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 12.712752 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.794897 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 4.278901 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 5.389969 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 4.592554 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 5.587698 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.151198 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.269591 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.113577 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.920777 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.305775 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.64619 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.100406 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 6.434184 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.480198 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.765301 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.435618 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.033467 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.157336 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.688051 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0.728142 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.047667 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 16.847651 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.291614 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.212624 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg23659 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1754 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003481 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g189510 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg4678, Sbi_jg7400, Sbi_jg7401 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12629 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001375 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51757, Sgl57062 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000020108, gene:ENSEOMG00000024140 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0009900, CQ.Regalona.r1.5BG0009910 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30125180, pistato.v30195870 |
| Apiaceae | Apium graveolens | 1 | Ag9G01569 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G005580 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696811, gene-LOC120105906 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_Unassigned.144.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G21529 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G19350.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026808m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g17960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g017090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0047 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0030 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno18g05300 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0503s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g04300 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11429 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.83, evm.TU.LG09.1137 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000932, Pov_00028571 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G23963, Lb4G24305 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.410, BH08.419, CH08.494 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0618510 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0507840.1 |
| Poaceae | Oryza coarctata | 2 | Oco15G002740, Oco16G002760 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g06520.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G001760, Chr17G001610, Chr20G011540, Chr29G011060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G592600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG054410, gene_TRIDC5BG058380 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G372300.1, TraesCS5B02G374400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb415480_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39017, nbis-gene-41666 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g22522, Zma_g23659 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.534, evm.TU.LG17.545 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g01560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.625 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24811 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19052 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.184 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016082 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-197 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10455 |
| Salicaceae | Populus euphratica | 1 | populus_peu08155 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132604254 |
| Solanaceae | Solanum chilense | 1 | SOLCI004441900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107005671 |
| Tamaricaceae | Reaumuria soongarica | 1 | MSTRG.8943_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4682 |