Basic Information
Locus ID:
Ag9G01566
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1350)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 199901305 | 199907896 | + | Ag9G01566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.96 | 45,045.96 Da | 34.24 | 87.69 | -0.13 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43540.1 | Protein of unknown function (DUF1350). | 0 |
| RefSeq | XP_017229450.1 | PREDICTED: uncharacterized protein LOC108204494 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A166GZB1 | Alpha/beta-Hydrolases superfamily protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002185 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 8.489373 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.444164 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 7.005813 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 8.066021 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 7.593989 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.36601 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.919128 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.228488 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 18.879223 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 16.582535 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 19.903976 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.684252 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 18.274618 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 16.368284 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.272773 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 8.65969 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.643862 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 14.324584 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 21.804068 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 12.971988 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 14.850624 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 5.159249 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.280932 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 6.748442 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.362547 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 18.786041 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 16.788931 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 27.417645 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 14.949333 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 5.37123 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 10.192929 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 8.156281 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.943335 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 6.094954 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 4.158844 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 9.336793 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 4.190652 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.552249 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.757427 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 20.532907 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 60.459652 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.068094 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 4.010973 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 3.41843 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.780201 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 5.437211 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 6.468318 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.974024 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.573734 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 12.190684 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg36916 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13829 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000757 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113880 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31032, Sbi_jg58251 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25857 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004713 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54787, Sgl60090 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005567, gene:ENSEOMG00000021157 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0019840, CQ.Regalona.r1.5BG0021100 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30208610 |
| Apiaceae | Apium graveolens | 1 | Ag9G01566 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G004940 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716958 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2654.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G06890 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G43540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002575m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g17620.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g056610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1766 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1893 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g19640 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0134s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate11g00200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.714 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04941 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2041, BH03.2371, CH03.2358 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536180, gene-QOZ80_6BG0489430 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0481010.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005431 |
| Poaceae | Oryza coarctata | 2 | Oco17G005600, Oco18G005710 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g26580.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G193000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701972 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G009290, Chr14G014520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G353300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG034450, gene_TRIDC5BG036330 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G211100.1, TraesCS5B02G212700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb313900_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-19788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32594 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2689, evm.TU.LG14.1824 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g40410 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.636 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13851 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12094 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-8892 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.454 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014790 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3934 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8074 |
| Salicaceae | Populus euphratica | 3 | populus_peu12553, populus_peu38014, populus_peu38173 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635487 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029018 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_18235 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G0003 |
| Zosteraceae | Zostera marina | 1 | Zosma01g41010.v3.1 |