Basic Information
Locus ID:
Ag9G01559
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Protein of unknown function (DUF1218)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 198470822 | 198475564 | + | Ag9G01559 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 25,718.42 Da | 37.45 | 97.55 | 0.27 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31130.1 | Protein of unknown function (DUF1218). | 0 |
| RefSeq | XP_017243550.1 | PREDICTED: uncharacterized protein LOC108215539 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A6L5BBD1 | CASP-like protein OS=Apium graveolens OX=4045 GN=AG4045_028371 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 95.277473 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 108.974503 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 98.930077 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 96.25959 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 87.961113 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 95.372238 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 78.725456 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 50.051323 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 136.417648 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 128.439468 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 127.107445 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 142.484253 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 131.068558 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 160.228729 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 108.650276 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 109.841026 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 125.382713 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 115.414375 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 122.995171 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 113.239723 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 123.095062 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 112.270355 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 103.214539 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 117.765198 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 109.273079 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 116.004303 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 134.919373 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 108.792343 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 111.727364 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 127.764015 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 116.005302 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 106.662689 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 161.214142 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 162.486526 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 134.992004 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 290.184387 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 202.503815 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 257.798615 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 145.85759 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 135.466309 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 172.768005 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 150.959015 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 171.683807 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 134.339676 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 154.365814 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 173.400986 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 131.143173 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 159.743469 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 169.349747 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 149.202332 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg23676, jg23740, jg36889 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13047 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004535, Ah009296 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g080780 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17512, Sbi_jg62166 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg765 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007463, GOSA_00009199 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24163, Sgl29344, Sgl63438, Sgl67917 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009077, gene:ENSEOMG00000023337 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0003940, CQ.Regalona.r1.4BG0004120 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30060600, pistato.v30060630, pistato.v30252460 |
| Apiaceae | Apium graveolens | 2 | Ag9G01559, AgUnG00185 |
| Arecaceae | Cocos nucifera | 2 | COCNU_04G002750, COCNU_04G014720 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702838, gene-LOC103709946 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.405.V1.1, AsparagusV1_07.295.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G06072, Ftri3G15960 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31130.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026302m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29010.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g010620.2N, BniB05g006730.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G2227, Ceq04G2228 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2423, Cgl04G2424 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g09960 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate08g23950, gene.Thate09g17320, gene.Thate09g17330 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10790, nbisL1-mrna-11407 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1640 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00028670, Pov_00028886 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05259, Lb2G08451, Lb2G08465 |
| Poaceae | Echinochloa crus-galli | 6 | AH05.2103, AH05.924, BH05.2238, BH05.870, CH05.2321 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0370240, gene-QOZ80_5AG0406970 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0011360.1, HORVU.MOREX.r3.1HG0072700.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_008979 |
| Poaceae | Oryza coarctata | 4 | Oco09G001070, Oco09G011760, Oco10G001170, Oco10G011730 |
| Poaceae | Oryza sativa | 2 | LOC_Os05g02990.2, LOC_Os05g38960.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G024100, gene-BS78_09G171300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0502271 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G013340, Chr02G027880, Chr04G018090, Chr12G023430 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G115900, Tel3E01G911300, Tel3E01G911700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG007530, gene_TRIDC1AG043200 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G055200.1, TraesCS1A02G290600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb265650_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18318, nbis-gene-53281, nbis-gene-57032 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26326, Zma_g27611 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG07.167 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g08680, gene.Posoc03g08690 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_14_RagTag.1046 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-25110, nbisL1-mrna-25545, nbisL1-mrna-8593 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15932, nbisL1-mrna-5274 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17333 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000022l.15, evm.TU.utg000025l.169 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00012296, Maker00016031 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16, nbisL1-mrna-9343 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10228, nbisL1-mrna-25326 |
| Salicaceae | Populus euphratica | 3 | populus_peu04515, populus_peu13129, populus_peu23791 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132609569, gene-LOC132638286 |
| Solanaceae | Solanum chilense | 1 | SOLCI002271900 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107027810, gene-LOC107029090 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17562 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G1159, TC11G1792, TC11G1799 |
| Zosteraceae | Zostera marina | 1 | Zosma03g09380.v3.1 |