Basic Information
Locus ID:
Ag9G01552
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
DDB1- and CUL4-associated factor homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 197909513 | 197920869 | - | Ag9G01552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.03 | 213,246.81 Da | 46.39 | 85.04 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 121 | 1101 | 1.08E-5 | IPR016024 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 1530 | 1763 | 7.66E-16 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1528 | 1852 | 5.9E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 1527 | 1567 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1570 | 1610 | 13.0 | IPR001680 |
| SMART | SM00667 | Lish | 1187 | 1219 | 5.0E-5 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 1187 | 1219 | 10.118069 | IPR006594 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 980 | 994 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1836 | 1951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1884 | 1951 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 968 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1296 | 1339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1836 | 1850 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1296 | 1318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1851 | 1873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 997 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31160.1 | DDB1-CUL4 associated factor 1. Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4, likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development. | 0 |
| RefSeq | XP_017225044.1 | PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q9M086 | DDB1- and CUL4-associated factor homolog 1 OS=Arabidopsis thaliana OX=3702 GN=DCAF1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A162B3I7 | LisH domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002179 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 35.18298 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 26.305252 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 28.584309 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.821478 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 29.890623 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 30.972569 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 34.193275 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 40.660599 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.277252 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 30.894791 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.178394 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 34.581673 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 36.049145 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.853556 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.763653 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.732779 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.830089 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 19.25581 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 11.501263 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 21.466223 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 21.987558 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.421251 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.69209 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.666672 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 15.066767 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.496933 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 18.274931 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 17.625151 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 19.322775 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 7.563781 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 9.275783 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 7.340008 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 32.160221 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.364752 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 30.809149 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 17.259203 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 7.907882 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.993256 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 19.402962 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 16.34354 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.661349 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 28.723757 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 22.616489 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 35.465488 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 28.080235 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.708483 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 30.178076 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 13.648348 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 15.335122 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.50469 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg23679, jg36883, jg36884, jg36885 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13051 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034265 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20619, Sbi_jg23143 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16991 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009187 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63447, Sgl67926 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017778, gene:ENSEOMG00000018771 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012890, CQ.Regalona.r1.2BG0014760 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30252430 |
| Apiaceae | Apium graveolens | 5 | Ag11G03697, Ag11G04180, Ag5G00952, Ag7G01268, Ag9G01552 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G019710, COCNU_11G003870 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103702667, gene-LOC103711292 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G30737 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G31160.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024189m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g29040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g085200.2N, BniB03g010590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G2231 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2427 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno08g03840 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0646s00003.v1.0, Dusal.0646s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g13820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1641 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028671 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12603 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2809, BH09.3041, CH09.3212 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0298330, gene-QOZ80_4BG0329010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0216500.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019402 |
| Poaceae | Oryza coarctata | 2 | Oco07G020050, Oco08G019340 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g59460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G294700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0306883, Pt_Chr0503501 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G000190, Chr25G000150, Chr26G019010, Chr30G000220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G1059300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG081250, gene_TRIDC2BG089850 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G566600.1, TraesCS2B02G630100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb076460_P001, Zm00001eb434410_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-23277, nbis-gene-6271, nbis-gene-6272 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20745, Zma_g22296 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.169, evm.TU.LG15.40 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g17080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.1043 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16895 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17332 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.166 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012205 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8592 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23035 |
| Salicaceae | Populus euphratica | 1 | populus_peu13122 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635571 |
| Solanaceae | Solanum chilense | 1 | SOLCI003202800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028463 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.5302_chr02_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1166, TC11G1837 |
| Zosteraceae | Zostera marina | 1 | Zosma04g16140.v3.1 |