Basic Information
Locus ID:
Ag9G01525
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 193070911 | 193074083 | - | Ag9G01525 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.79 | 16,439.65 Da | 38.32 | 85.11 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.130.10.10 | - | 89 | 143 | 1.4E-5 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 137 | 9.505904 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15358.1 | 0 | |
| RefSeq | XP_017254844.1 | PREDICTED: uncharacterized protein LOC108224670 [Daucus carota subsp. sativus] | 0 |
| F4IH25 | Ribosome biogenesis protein BOP1 homolog OS=Arabidopsis thaliana OX=3702 GN=BOP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164WDY3 | Transmembrane protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_020987 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 50.137577 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 45.649754 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 38.58849 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 42.73032 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 48.761089 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 58.263969 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 48.772694 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 35.940941 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 65.316063 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 69.847763 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 73.116661 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 74.813454 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 73.037796 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 68.056664 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 48.086075 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 48.081013 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 51.909966 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 71.379936 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 48.758595 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 40.377914 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 71.56485 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 85.601158 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 93.93763 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 72.22596 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 71.785553 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 88.908783 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 61.972267 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 58.864456 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 68.873032 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.262667 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 27.208307 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.157875 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 23.913799 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 18.591055 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.430431 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 18.29125 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 15.916712 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 11.876645 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 17.546795 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.439823 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 16.967869 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 43.934383 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 59.204311 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 95.595451 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 110.72773 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 35.080444 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 105.927711 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 43.526993 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 58.702591 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 50.311592 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29950 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24181 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah026706, Ah026707 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18327, Sbi_jg36706 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4652 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013517, GOSA_00013518 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34219, Sgl39517, Sgl39562 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001074, gene:ENSEOMG00000003254 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018840, CQ.Regalona.r1.6BG0019890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30111660 |
| Apiaceae | Apium graveolens | 4 | Ag1G00714, Ag6G02836, Ag9G01525, AgUnG00063 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G008500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721398 |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.1845.V1.1, AsparagusV1_03.229.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G06808, Ftri15G16982 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40360.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001320m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g27170.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB06g003520.2N, BniB06g003570.2N, BniB08g029370.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq07G2158, Ceq07G2177 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G2388 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g02260 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1024s00003.v1.0, Dusal.1024s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01370 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6784 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG08.778, evm.TU.LG08.779, evm.TU.LG08.795 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001957 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15169 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1350, BH08.1556, CH08.1579 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0599220 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0505300.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_049929 |
| Poaceae | Oryza coarctata | 2 | Oco13G005510, Oco14G006200 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g25440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G078500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0207426, Pt_Chr0604862 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G001790, Chr04G031340, Chr07G030350, Chr12G033500 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G577300, Tel6E01G786900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG035400, gene_TRIDC5AG052800 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G360900.2, TraesCS5B02G363500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb131370_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-15470 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g191 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g00690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1470 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3736, nbisL1-mrna-3739 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6051 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18888 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.433 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005331 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2864, nbisL1-mrna-2865 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19176 |
| Salicaceae | Populus euphratica | 1 | populus_peu08269 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598660 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007762 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15438 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G0676 |
| Zosteraceae | Zostera marina | 1 | Zosma01g19900.v3.1 |