halophFGD

Basic Information

Locus ID: Ag9G01513

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: HBS1-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	189473003	189479409	+	Ag9G01513

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	79,684.28 Da	46.48	82.82	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd01883	EF1_alpha	303	522	4.92017E-119	-
CDD	cd00350	rubredoxin_like	56	78	0.00283205	-
CDD	cd04093	HBS1_C_III	617	725	3.05642E-41	-
Pfam	PF00009	Elongation factor Tu GTP binding domain	302	495	2.2E-45	IPR000795
Pfam	PF03143	Elongation factor Tu C-terminal domain	619	725	5.7E-14	IPR004160
SUPERFAMILY	SSF50447	Translation proteins	521	616	9.72E-18	IPR009000
SUPERFAMILY	SSF90209	Ran binding protein zinc finger-like	54	80	8.24E-6	IPR036443
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	301	544	3.23E-60	IPR027417
SUPERFAMILY	SSF50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	622	726	4.24E-25	IPR009001
Gene3D	G3DSA:2.40.30.10	Translation factors	620	727	6.4E-32	-
Gene3D	G3DSA:3.40.50.300	-	290	523	1.3E-82	IPR027417
Gene3D	G3DSA:2.40.30.10	Translation factors	526	616	9.3E-22	-
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	299	530	54.7696	IPR000795
ProSitePatterns	PS01358	Zinc finger RanBP2-type signature.	57	76	-	IPR001876
PRINTS	PR00315	GTP-binding elongation factor signature	443	452	2.7E-19	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	362	370	2.7E-19	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	382	392	2.7E-19	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	398	409	2.7E-19	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	303	316	2.7E-19	IPR000795
MobiDBLite	mobidb-lite	consensus disorder prediction	14	33	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	45	-	-

Gene Ontology

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding)

KEGG Pathway

KO Term:

K14416 (elongation factor 1 alpha-like protein)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G10630.3	-
RefSeq	XP_017230811.1	PREDICTED: HBS1-like protein isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	Q2KHZ2	HBS1-like protein OS=Bos taurus OX=9913 GN=HBS1L PE=2 SV=1
TrEMBL	A0A166GXJ2	Tr-type G domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002123 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.969114	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	10.621498	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	11.547048	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	10.307854	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	11.35472	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	9.815498	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	10.349673	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	9.669765	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.116022	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.212011	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	19.595463	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	18.806223	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.752333	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	17.681086	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	6.641786	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	7.47657	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	9.869754	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	7.008133	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	8.400141	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.813289	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	9.293191	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	9.462003	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	10.450611	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	11.374712	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.087375	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	10.665884	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.877797	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	7.935275	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	10.734426	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	6.06665		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	7.874016		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	6.90793		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	6.00477		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	8.130737		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	6.294984		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	5.145101		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.011735		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	3.928773		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	11.780604	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	6.246547	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	5.695192	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	13.859482	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	8.994913	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	15.179904	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	10.509824	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	13.945593	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	10.054939	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	13.322544	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	16.091057	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	16.337351	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg12968, jg8467, jg8468
Aizoaceae	Mesembryanthemum crystallinum	1	gene_13102
Amaranthaceae	Atriplex hortensis	1	Ah034378
Amaranthaceae	Beta vulgaris	1	BVRB_2g034750
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg20486, Sbi_jg23288
Amaranthaceae	Salicornia europaea	1	Seu_jg17085
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00009126
Amaranthaceae	Suaeda glauca	2	Sgl63542, Sgl68026
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000017535, gene:ENSEOMG00000018483 ... gene:ENSEOMG00000050214, gene:ENSEOMG00000050586
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.2AG0013340, CQ.Regalona.r1.2BG0015310
Anacardiaceae	Pistacia vera	1	pistato.v30251970
Apiaceae	Apium graveolens	1	Ag9G01513
Arecaceae	Cocos nucifera	2	COCNU_07G012640, COCNU_09G006940
Arecaceae	Phoenix dactylifera	2	gene-LOC103716341, gene-LOC103719267
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.2229.V1.1, AsparagusV1_09.1541.V1.1
Asteraceae	Flaveria trinervia	1	Ftri8G26283
Brassicaceae	Arabidopsis thaliana	1	AT5G10630.2
Brassicaceae	Eutrema salsugineum	1	Thhalv10012906m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp6g32810.v2.2
Brassicaceae	Brassica nigra	2	BniB05g026600.2N, BniB08g004590.2N
Casuarinaceae	Casuarina glauca	1	Cgl04G2396
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno03g05610
Dunaliellaceae	Dunaliella salina	1	Dusal.0036s00015.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate01g06390
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-351
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG07.1608
Plantaginaceae	Plantago ovata	2	Pov_00004307, Pov_00011655
Plumbaginaceae	Limonium bicolor	1	Lb2G09225
Poaceae	Echinochloa crus-galli	4	AH01.1657, BH01.1855, BH09.2953, CH01.1960
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0224220, gene-QOZ80_3BG0269250 ... gene-QOZ80_4AG0299340, gene-QOZ80_4BG0330030
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.2HG0194480.1, HORVU.MOREX.r3.2HG0209800.1 ... HORVU.MOREX.r3.4HG0344350.1
Poaceae	Lolium multiflorum	2	gene-QYE76_046053, gene-QYE76_047565
Poaceae	Oryza coarctata	3	Oco07G014720, Oco07G019310, Oco08G014210
Poaceae	Oryza sativa	3	LOC_Os01g02720.2, LOC_Os04g50870.1, LOC_Os04g58140.1
Poaceae	Paspalum vaginatum	2	gene-BS78_06G213000, gene-BS78_06G284200
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0300097, Pt_Chr0300136, Pt_Chr0300139, Pt_Chr0301480 ... Pt_Chr0301520
Poaceae	Sporobolus alterniflorus	5	Chr04G024900, Chr07G023710, Chr12G027670, Chr25G000640 ... Chr30G000680
Poaceae	Thinopyrum elongatum	3	Tel2E01G753400, Tel2E01G943100, Tel2E01G962300
Poaceae	Triticum dicoccoides	4	gene_TRIDC2AG063670, gene_TRIDC2AG077490 ... gene_TRIDC2BG067780, gene_TRIDC2BG085690
Poaceae	Triticum aestivum	6	TraesCS2A02G444100.1, TraesCS2A02G592500.1 ... TraesCS2B02G465300.1, TraesCS2B02G591700.6, TraesCS2D02G443300.1, TraesCS2D02G562000.1
Poaceae	Zea mays	2	Zm00001eb066140_P003, Zm00001eb430090_P001
Poaceae	Zoysia japonica	2	nbis-gene-39587, nbis-gene-6200
Poaceae	Zoysia macrostachya	2	Zma_g22229, Zma_g866
Portulacaceae	Portulaca oleracea	2	evm.TU.LG07.858, evm.TU.LG15.74
Posidoniaceae	Posidonia oceanica	1	gene.Posoc02g14840
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_10_RagTag.980
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-13510
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-10848
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-9218
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000004l.253
Rhizophoraceae	Kandelia obovata	1	Maker00003942
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-3688
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-7723
Salicaceae	Populus euphratica	2	populus_peu04594, populus_peu13078
Solanaceae	Lycium barbarum	1	gene-LOC132633261
Solanaceae	Solanum chilense	2	SOLCI005652600, SOLCI007390700
Solanaceae	Solanum pennellii	2	gene-LOC107007605, gene-LOC107014698
Tamaricaceae	Reaumuria soongarica	2	STRG.11197_chr05_-, STRG.7250_chr05_-
Tamaricaceae	Tamarix chinensis	1	TC11G1520
Zosteraceae	Zostera marina	2	Zosma04g23230.v3.1, Zosma06g29070.v3.1