Basic Information
Locus ID:
Ag9G01501
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Retinoblastoma-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 188261990 | 188266542 | + | Ag9G01501 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 60,647.90 Da | 44.90 | 83.14 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 279 | 323 | 0.099 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 70 | 95 | 0.073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 27 | 51 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 243 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 363 | 1.19E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 135 | 2.2E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 150 | 385 | 4.8E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 13 | 51 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 160 | 201 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 95 | 0.0046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 325 | 364 | 0.0031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 244 | 0.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 323 | 84.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 70 | 104 | 9.40565 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 544 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21060.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_017229593.1 | PREDICTED: protein RBL [Daucus carota subsp. sativus] | 0 |
| Q5E915 | Protein RBL OS=Arabidopsis thaliana OX=3702 GN=RBL PE=1 SV=1 | 0 | |
| TrEMBL | A0A162B3A9 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002139 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 19.10705 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.03561 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.965822 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 17.382006 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 17.93964 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.55282 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 17.243097 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.594582 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 35.182865 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.491299 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.828476 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 35.892891 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 33.082993 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 29.826572 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 10.130518 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.147578 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.289394 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 16.247429 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.874311 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.294597 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.877857 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 16.469334 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 15.817876 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 15.030862 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.57353 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 14.846035 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.227023 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 16.234539 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 16.121016 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.691558 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.913335 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 12.90369 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 21.765417 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 21.454796 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 19.058393 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.166329 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.014498 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 10.858508 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 20.260059 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 11.060221 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 8.537889 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.425978 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 15.715305 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 19.896761 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 20.170996 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 22.532141 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 18.983101 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 21.565042 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.251556 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.738836 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1485 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21853 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028578 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26778, Sbi_jg33788 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8480 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011718 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73635, Sgl77099 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004794, gene:ENSEOMG00000037726 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0007870, CQ.Regalona.r1.9BG0008140 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30169010 |
| Apiaceae | Apium graveolens | 2 | Ag1G01052, Ag9G01501 |
| Arecaceae | Cocos nucifera | 4 | COCNU_05G002670, COCNU_05G002700, COCNU_05G002730 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103705260, gene-LOC103707770, gene-LOC120103678 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.2102.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G22646, Ftri18G02646 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020461m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g19020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042670.2N, BniB07g050150.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1632 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g04270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0049s00035.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05370 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1394 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014724 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13655, Lb4G24185 |
| Poaceae | Echinochloa crus-galli | 10 | AH01.4579, AH05.3261, BH01.2536, BH03.151, BH03.152 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0238140, gene-QOZ80_3BG0289880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0398040.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_070021 |
| Poaceae | Oryza coarctata | 2 | Oco05G006050, Oco06G006200 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g10990.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G437600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0101619, Pt_Chr0404877 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr04G001660, Chr07G009610, Chr20G007920 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G432000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG006950, gene_TRIDC4BG044160 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G050200.1, TraesCS4B02G254400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb007220_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2533, nbis-gene-4110, nbis-gene-54605 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1821, Zma_g4180 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG02.1907, evm.TU.LG08.945, evm.TU.LG09.43 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g08670 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1402 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16816 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4638 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1205 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.892 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008176 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13408 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3870 |
| Salicaceae | Populus euphratica | 4 | populus_peu01482, populus_peu01503, populus_peu19619 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645323 |
| Solanaceae | Solanum chilense | 1 | SOLCI004726200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004954 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_11398, gene_8361 |
| Tamaricaceae | Tamarix chinensis | 2 | TC10G0061, TC12G0687 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01470.v3.1 |