Basic Information
Locus ID:
Ag9G01445
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Heterogeneous nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 176840629 | 176845920 | - | Ag9G01445 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 40,798.91 Da | 57.86 | 61.87 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12254 | RRM_hnRNPH_ESRPs_RBM12_like | 173 | 245 | 1.26067E-28 | - |
| CDD | cd12254 | RRM_hnRNPH_ESRPs_RBM12_like | 57 | 126 | 5.61503E-22 | - |
| CDD | cd12254 | RRM_hnRNPH_ESRPs_RBM12_like | 277 | 349 | 1.69827E-29 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 279 | 346 | 3.6E-8 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 175 | 242 | 1.3E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 53 | 232 | 7.47E-20 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 264 | 361 | 9.67E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 264 | 362 | 8.7E-30 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 153 | 263 | 1.1E-28 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 46 | 146 | 1.0E-20 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 57 | 126 | 0.011 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 277 | 349 | 2.6E-7 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 173 | 245 | 1.5E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 172 | 249 | 9.814416 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 276 | 364 | 10.701297 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 170 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20890.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_017257972.1 | PREDICTED: RNA-binding protein sym-2 isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q5E9J1 | Heterogeneous nuclear ribonucleoprotein F OS=Bos taurus OX=9913 GN=HNRNPF PE=2 SV=3 | 0 | |
| TrEMBL | A0A166GW49 | Heterogeneous nuclear ribonucleoprotein F OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002073 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 15.330604 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 11.414137 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 14.249733 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 15.510487 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 13.722516 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 17.300686 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 18.342672 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 19.798038 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 17.796566 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.742836 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 21.702917 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 21.076452 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 19.310085 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.679724 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 11.71691 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.425128 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 11.283871 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 11.152591 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 10.864953 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.833295 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.002797 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 18.574282 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.030704 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 18.723127 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 17.735298 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 11.314015 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 10.771806 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.996862 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.511126 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 15.696623 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.415491 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 16.4526 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 20.808441 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 23.092083 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 26.003345 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 15.879684 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.904316 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 14.561812 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 12.95854 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.745762 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.673997 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 26.94906 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 13.801429 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 21.253414 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 17.472767 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 31.85787 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 13.493006 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.216805 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 25.696007 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.274754 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg19930, jg30933, jg35561, jg8559 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11634, gene_13365 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004988, Ah026877 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g072690, BVRB_6g130800 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13674, Sbi_jg17996, Sbi_jg52227, Sbi_jg62621 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1208, Seu_jg9618 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014420, GOSA_00017643 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23850, Sgl29021, Sgl33226, Sgl38834 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000002790, gene:ENSEOMG00000003814 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.4AG0001490, CQ.Regalona.r1.4BG0001600 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30053060, pistato.v30212160 |
| Apiaceae | Apium graveolens | 2 | Ag3G01780, Ag9G01445 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G014570, COCNU_09G005410, COCNU_14G012190 ... |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103701104, gene-LOC103703680, gene-LOC103704569 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1051.V1.1, AsparagusV1_07.3730.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G19395, Ftri17G00270, Ftri6G33629 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G20890.1, AT5G66010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021270m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g30680.v2.2, Sp3g18920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042780.2N, BniB07g031560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1903 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1904 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g02780, gene.Cymno12g02910 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.1139s00002.v1.0, Dusal.1266s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g12960, gene.Thate08g03200 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8736 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2873, evm.TU.LG09.230 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017108, Pov_00020330 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb3G21209, Lb6G30274, Lb6G30275 |
| Poaceae | Echinochloa crus-galli | 1 | BH05.1422 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0361750, gene-QOZ80_5BG0410150 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0544100.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019510 |
| Poaceae | Oryza coarctata | 2 | Oco03G026380, Oco04G026780 |
| Poaceae | Oryza sativa | 3 | LOC_Os02g58600.1, LOC_Os11g03890.1, LOC_Os12g03710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G043100, gene-BS78_09G250300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200984, Pt_Chr0201000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G016170, Chr12G020570, Chr18G016380, Chr22G000380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G092500 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG004300 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G035800.1, TraesCS6B02G050200.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb297160_P002, Zm00001eb323990_P004 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13569, nbis-gene-24743 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g27446, Zma_g27447, Zma_g28886, Zma_g28887 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.1585, evm.TU.LG15.1675, evm.TU.LG18.1762 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g05460, gene.Posoc09g06410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.25, evm.TU.Scaffold_6_RagTag.2193 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16947, nbisL1-mrna-24776 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-12884, nbisL1-mrna-5966 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11646, nbisL1-mrna-19344 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1344, evm.TU.utg000027l.555 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007688, Maker00017989 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-23119, nbisL1-mrna-5440 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11570, nbisL1-mrna-23692 |
| Salicaceae | Populus euphratica | 3 | populus_peu01932, populus_peu14025, populus_peu35875 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623343, gene-LOC132643580 |
| Solanaceae | Solanum chilense | 3 | SOLCI000081000, SOLCI003502800, SOLCI007267900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004838, gene-LOC107011669, gene-LOC107015497 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.25149_chr10_+, STRG.28634_chr04_+, gene_5549 |
| Tamaricaceae | Tamarix chinensis | 3 | TC02G2074, TC02G3691, TC04G0899 |
| Zosteraceae | Zostera marina | 1 | Zosma01g19890.v3.1 |