Basic Information
Locus ID:
Ag9G01432
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 171591870 | 171593361 | - | Ag9G01432 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.00 | 43,595.76 Da | 53.38 | 95.43 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 17 | 319 | 5.4E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 11 | 342 | 6.74E-67 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 215 | 338 | 4.8E-37 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 11 | 106 | 3.3E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 107 | 179 | 3.3E-36 | - |
| SMART | SM00220 | serkin_6 | 14 | 319 | 6.8E-67 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 14 | 319 | 40.032448 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 144 | 156 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 20 | 47 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51170.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017257913.1 | PREDICTED: serine/threonine-protein kinase UCN-like [Daucus carota subsp. sativus] | 0 |
| Q9SYB9 | Serine/threonine-protein kinase UCN OS=Arabidopsis thaliana OX=3702 GN=UNC PE=1 SV=1 | 0 | |
| TrEMBL | A0A166GVF5 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_002053 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.617677 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.312762 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.273531 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.32085 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0.331696 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.319261 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.114265 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.161583 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.69231 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 26.224583 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 24.6453 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 14.454072 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 18.78187 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.987023 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.383042 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 2.954377 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 7.478444 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 4.95349 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 4.238995 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.262517 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 19.874561 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 22.379026 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.774422 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.89662 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 9.359616 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.953128 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.87641 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 10.181189 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.198279 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.24235 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.066055 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.344519 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 2.987394 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.306517 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.183931 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.391262 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.068401 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 7.10544 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 2.059525 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.377915 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.11517 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.463116 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.283849 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.850664 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 14.048684 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.46526 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.438102 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 13.094985 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35537, jg8581 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11656 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004953 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17950, Sbi_jg62579 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1154 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007087 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23898, Sgl29067 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010429, gene:ENSEOMG00000028221 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001090, CQ.Regalona.r1.4BG0001220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049880 |
| Apiaceae | Apium graveolens | 1 | Ag9G01432 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G012050, COCNU_11G006870 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696656, gene-LOC103711375, gene-LOC120111341 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G16543, Ftri2G31189, Ftri6G27573 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G51170.1, AT3G20830.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011554m.g.v1.0, Thhalv10020828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g37910.v2.2, Sp3g18850.v2.2, Sp4g07020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g042880.2N, BniB04g059000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G1993 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1981 |
| Cymodoceaceae | Cymodocea nodosa | 3 | gene.Cymno01g05700, gene.Cymno05g08300, gene.Cymno06g08990 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08480 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-378 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.273 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.2385, AH08.2008, BH03.2513, BH08.2108, CH03.2708 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0539530, gene-QOZ80_6BG0492920 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.5HG0490610.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_006145, gene-QYE76_029931, gene-QYE76_029959 |
| Poaceae | Oryza coarctata | 4 | Oco15G011410, Oco16G011170, Oco17G007840, Oco18G008050 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g39460.1, LOC_Os09g31210.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G223000, gene-BS78_07G182900 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr10G007350, Chr11G012000, Chr16G016880, Chr17G016220 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G423600, Tel7E01G432500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC5AG019520, gene_TRIDC5BG043590 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G263600.1.cds1, TraesCS5B02G263000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb034780_P001, Zm00001eb101850_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-17385, nbis-gene-19496, nbis-gene-42542 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g23217, Zma_g24331, Zma_g30535, Zma_g32783 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG08.1703, evm.TU.LG18.1795, evm.TU.LG19.1066 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g17320, gene.Posoc03g10410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.3, evm.TU.Scaffold_13_RagTag.1069 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24797, nbisL1-mrna-29954 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3558, nbisL1-mrna-6446 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16435, nbisL1-mrna-19319 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.275, add.evm.TU.utg000027l.274 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015337, Maker00018195 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18546, nbisL1-mrna-18886 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-11548, nbisL1-mrna-20732 |
| Salicaceae | Populus euphratica | 2 | populus_peu04342, populus_peu35142 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643822 |
| Solanaceae | Solanum chilense | 1 | SOLCI006856800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003178 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4952 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3728 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07820.v3.1 |