Basic Information
Locus ID:
Ag9G01377
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 161726408 | 161727142 | - | Ag9G01377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 27,619.38 Da | 57.19 | 61.56 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00018 | AP2 | 21 | 78 | 4.0761E-31 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 21 | 71 | 2.3E-12 | IPR001471 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 21 | 80 | 1.18E-17 | IPR016177 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 21 | 80 | 2.4E-20 | IPR036955 |
| SMART | SM00380 | rav1_2 | 22 | 85 | 2.0E-32 | IPR001471 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 22 | 79 | 18.201958 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 23 | 34 | 4.9E-7 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 45 | 61 | 4.9E-7 | IPR001471 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19790.1 | related to AP2 11. encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family (RAP2.11). The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | 0 |
| RefSeq | XP_017223632.1 | PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Daucus carota subsp. sativus] | 0 |
| A2Q5W1 | Ethylene-responsive transcription factor ERN1 OS=Medicago truncatula OX=3880 GN=ERN1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166GTG4 | AP2/ERF domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0.222069 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0.096821 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0.09436 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.078254 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.078165 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0.168359 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.192309 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0.580395 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.363211 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.244171 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.104807 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.956641 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.868374 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.118517 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.367937 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.317853 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.056478 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.0789 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.111956 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0.649225 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.347178 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0.09055 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.061519 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.017212 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.074172 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.019236 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.265125 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.892898 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg15993, jg16832, jg36156, jg38147 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12077, gene_4466 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021306 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g070980 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg59159, Sbi_jg62705, Sbi_jg63478 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg1305, Seu_jg23424 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00012772, GOSA_00014326 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02562, Sgl07717 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000009185, gene:ENSEOMG00000012145 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.3AG0018800, CQ.Regalona.r1.3BG0019410 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30085870 |
| Apiaceae | Apium graveolens | 4 | Ag10G02985, Ag3G02846, Ag4G01996, Ag9G01377 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G014210 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717663, gene-LOC103723824, gene-LOC120105139 |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G12328, Ftri2G16437 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G19790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015715m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g24610.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g042940.2N, BniB05g043630.2N, BniB08g010030.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G2363, Ceq08G1402 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl05G2529, CglSG0006 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g11830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g37390 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.375 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020748 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28454 |
| Poaceae | Echinochloa crus-galli | 7 | AH03.3468, AH03.551, BH03.3679, BH03.575, BH03.654, CH03.746 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_7AG0560100, gene-QOZ80_7AG0574100 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0132160.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_040586, gene-QYE76_042112 |
| Poaceae | Oryza coarctata | 3 | Oco13G010750, Oco14G003880, Oco14G011450 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g10410.1, LOC_Os07g38750.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G072800, gene-BS78_02G325300 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003740, Chr19G016380, Chr24G010960, Chr27G013540 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G373000, Tel6E01G704700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG023680, gene_TRIDC2BG029450 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G185600.1.cds1, TraesCS2B02G221700.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb107500_P001, Zm00001eb302890_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10526, nbis-gene-35547, nbis-gene-615 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g4892, Zma_g5412, Zma_g6704 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG07.2099, evm.TU.LG15.1032, evm.TU.LG18.1101 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g04740 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.427, evm.TU.Scaffold_2_RagTag.1826 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-2957, nbisL1-mrna-3206, nbisL1-mrna-7753 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-16069, nbisL1-mrna-2755, nbisL1-mrna-6349 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-13879, nbisL1-mrna-22612, nbisL1-mrna-5459 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.4, add.evm.TU.utg000009l.74 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011553 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-20134, nbisL1-mrna-21927, nbisL1-mrna-5824 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-12434, nbisL1-mrna-16354, nbisL1-mrna-575 |
| Salicaceae | Populus euphratica | 4 | populus_peu04466, populus_peu16062, populus_peu19374 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132605516, gene-LOC132608335, gene-LOC132629187 |
| Solanaceae | Solanum chilense | 3 | SOLCI003506800, SOLCI003927100, SOLCI004559600 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107001618, gene-LOC107002167, gene-LOC107016376 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G2691 |
| Zosteraceae | Zostera marina | 1 | Zosma05g22960.v3.1 |