Basic Information
Locus ID:
Ag9G01371
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 160541147 | 160551655 | + | Ag9G01371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 58,010.01 Da | 40.26 | 88.10 | -0.29 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G03820.1 | nonsense-mediated mRNA decay NMD3 family protein. | 0 |
| RefSeq | XP_017230671.1 | PREDICTED: 60S ribosomal export protein NMD3-like [Daucus carota subsp. sativus] | 0 |
| Q6P2Z6 | 60S ribosomal export protein NMD3 OS=Xenopus tropicalis OX=8364 GN=nmd3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A166GT86 | 60S ribosomal export protein NMD3 OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_001976 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 21.027483 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 17.495287 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 19.355986 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.365396 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 18.634293 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 16.300537 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 19.496901 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 13.351394 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 32.743408 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 32.082031 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 37.685375 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 36.648621 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 34.166245 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 30.395073 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 17.399893 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 18.949312 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 17.358276 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 27.026825 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 23.542906 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 30.326784 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 28.115763 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 30.373999 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 30.86034 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 30.131327 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 29.456135 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 28.154211 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 32.613972 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 23.513037 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 27.832361 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 12.742443 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 13.224253 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.388185 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 26.140686 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 20.574574 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 25.742729 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 22.273523 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 14.958493 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 17.329477 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 23.360847 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 18.983908 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 12.353749 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 32.657341 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 35.602676 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 48.009781 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 47.364319 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 36.251148 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 43.652126 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 27.822784 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 23.662979 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 25.82934 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10293, jg33899 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26174, gene_7044 |
| Amaranthaceae | Atriplex hortensis | 4 | Ah023006, Ah023008, Ah027932, Ah028116 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_7g174740, BVRB_8g183440 |
| Amaranthaceae | Salicornia bigelovii | 8 | Sbi_jg1860, Sbi_jg30013, Sbi_jg30014, Sbi_jg34662 ... |
| Amaranthaceae | Salicornia europaea | 5 | Seu_jg18447, Seu_jg2897, Seu_jg2898, Seu_jg5919, Seu_jg8839 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00000441, GOSA_00003112, GOSA_00011361 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl02860, Sgl07977, Sgl11075, Sgl16488, Sgl46356, Sgl51069 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000007661, gene:ENSEOMG00000038127 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2BG0024830, CQ.Regalona.r1.4AG0011770 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30190940 |
| Apiaceae | Apium graveolens | 4 | Ag4G02091, Ag6G01828, Ag9G00672, Ag9G01371 |
| Arecaceae | Cocos nucifera | 4 | COCNU_07G003200, COCNU_10G002710, contig69181369G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103695621, gene-LOC103698178, gene-LOC103711789 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G09151 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G03820.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10019828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g21090.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g043410.2N, BniB08g055730.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq09G1313, Ceq09G1314 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1748, Cgl09G1403 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08590 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0360s00009.v1.0, Dusal.0360s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g04510 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.519, evm.TU.LG03.1987 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00012271, Pov_00014191 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08263, Lb2G13237 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.4568, BH01.1779, BH02.4622, CH02.4664 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0047150, gene-QOZ80_1BG0096980 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_012849, gene-QYE76_058254, gene-QYE76_067060 |
| Poaceae | Oryza coarctata | 2 | Oco19G010910, Oco20G010730 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g42320.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G276800, gene-BS78_03G407400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0503336 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G027060, Chr09G005910, Chr13G018970, Chr15G018170 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G334700 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG029150, gene_TRIDC1BG034610 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G192300.1.cds1, TraesCS1B02G207100.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb024450_P001, Zm00001eb390490_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-38125, nbis-gene-39257, nbis-gene-59262 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12977 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG03.313, evm.TU.LG12.1391, evm.TU.LG14.1152 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g25470, gene.Posoc05g16470, gene.Posoc05g19990 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.784, evm.TU.Scaffold_8_RagTag.130 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10209, nbisL1-mrna-1176 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13100, nbisL1-mrna-17338 |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-17743, nbisL1-mrna-6461, nbisL1-mrna-7658 ... |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000018l.363, add.evm.TU.utg000019l.313 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003827, Maker00012669 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-17949, nbisL1-mrna-18808, nbisL1-mrna-19413 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-11456, nbisL1-mrna-13219, nbisL1-mrna-21572 |
| Salicaceae | Populus euphratica | 3 | populus_peu09706, populus_peu24780, populus_peu24801 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614403, gene-LOC132642668 |
| Solanaceae | Solanum chilense | 2 | SOLCI002175700, SOLCI006722300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023631 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2634 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G2264 |
| Zosteraceae | Zostera marina | 3 | Zosma01g03550.v3.1, Zosma02g22280.v3.1, Zosma03g24120.v3.1 |