Basic Information
Locus ID:
Ag9G01310
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 147147370 | 147148625 | - | Ag9G01310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 19,848.86 Da | 56.07 | 90.11 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 118 | 168 | 3.1E-13 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 168 | 1.06E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 174 | 1.2E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 162 | 11.132002 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24204.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017257327.1 | PREDICTED: uncharacterized protein LOC108226847 [Daucus carota subsp. sativus] | 0 |
| Q0WS06 | E3 ubiquitin-protein ligase APD1 OS=Arabidopsis thaliana OX=3702 GN=APD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A161ZTI4 | RING-type domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021473 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0.138632 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.245543 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0.092694 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 0 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 0 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 0.058449 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.320259 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.366293 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.429102 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0.043601 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0.792488 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0.335643 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0.175143 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.077488 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.604951 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.40158 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 0 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.304327 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.209768 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.081226 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.505522 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.568416 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.215339 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.397481 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0.095217 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17385, jg39978, jg39979 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027594 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g127600 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13100, Sbi_jg52750 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9094 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010158 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000002924, gene:ENSEOMG00000027849 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0025660 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30043410, pistato.v30205520 |
| Apiaceae | Apium graveolens | 1 | Ag9G01310 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G017150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103700820 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2148.V1.1 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G24204.3 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027110m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g22180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g081040.2N, BniB05g013010.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G2172, Ceq05G1381 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2315, Cgl05G1383 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09210 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0354s00010.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10548, nbisL1-mrna-5205 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.376 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023835 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05545, Lb7G33242, Lb7G33245 |
| Poaceae | Oryza coarctata | 2 | Oco11G006640, Oco12G006750 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g14200.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G107200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404542, Pt_Chr0404566 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.115, evm.TU.LG25.1219 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc03g16600, gene.Posoc03g16610 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1226, evm.TU.Scaffold_7_RagTag.791 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19229, nbisL1-mrna-742 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10000 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6632 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.618 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010433 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8278 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10050 |
| Salicaceae | Populus euphratica | 1 | populus_peu38159 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132602530, gene-LOC132623566 |
| Solanaceae | Solanum chilense | 1 | SOLCI006540200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107009104 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.4282_chr03_+, gene_1037 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1822, TC04G2598 |