Basic Information
Locus ID:
Ag9G01266
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 143845681 | 143848809 | - | Ag9G01266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.37 | 54,759.93 Da | 50.88 | 76.75 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 132 | 174 | 6.67E-7 | IPR036047 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 211 | 373 | 5.3E-13 | IPR017451 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 68 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 50 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 69 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017255936.1 | PREDICTED: uncharacterized protein LOC108225555 isoform X1 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A161ZTK6 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021443 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 14.778448 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.808582 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 10.063302 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 9.680792 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 11.568514 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 7.264813 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 11.755285 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.418795 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 3.147701 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 2.503167 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 2.097201 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.435855 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.956202 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 5.388258 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0.379863 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0.246109 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0.204929 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0.253801 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0.798545 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0.427162 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 1.030338 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 1.305943 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 1.264462 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 1.029876 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0.387426 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0.391153 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0.669892 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0.223864 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.77667 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.13936 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.054439 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.114726 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.954118 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.530601 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 4.693305 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.328624 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 4.648181 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.702765 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.873664 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.2314 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.357828 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.260827 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.411279 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.746375 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.857602 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.46857 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 3.804657 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 7.865472 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.916669 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg26011, jg26012, jg31188 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_24234, gene_24235 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah016032, Ah026551, Ah026552 |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_6g137470, BVRB_6g137480, BVRB_8g192530, BVRB_9g222500 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg14738, Sbi_jg5144, Sbi_jg55515 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13133, Seu_jg26066 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00023105, GOSA_00023106, GOSA_00023107, GOSA_00027953 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl34757, Sgl34758, Sgl40128, Sgl40129, Sgl43991, Sgl48760 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000000066, gene:ENSEOMG00000002549 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0017760, CQ.Regalona.r1.6BG0018860 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30147680, pistato.v30207720 |
| Apiaceae | Apium graveolens | 7 | Ag10G00023, Ag3G02211, Ag4G00489, Ag7G02002, Ag9G00213 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_05G001370, scaffold001189G000010 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702702 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.2547.V1.1, AsparagusV1_03.678.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri17G14209, FtriNA18279 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0759 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0769 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.2308, evm.TU.LG10.188 |
| Plantaginaceae | Plantago ovata | 8 | Pov_00001721, Pov_00004644, Pov_00012402, Pov_00012412 ... |
| Poaceae | Echinochloa crus-galli | 1 | BH01.556 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0213970, gene-QOZ80_3BG0259090 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0514220.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco05G025010 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g56500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G063000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0106960 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G029790, Chr07G028860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G646900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG059590, gene_TRIDC5BG063780 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G411600.1.cds1, TraesCS5D02G420400.1.cds1 |
| Poaceae | Zea mays | 4 | Zm00001eb213720_P001, Zm00001eb250170_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-16350 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2656 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_15_RagTag.306, evm.TU.Scaffold_3_RagTag.272 ... |
| Rhizophoraceae | Carallia pectinifolia | 5 | nbisL1-mrna-17131, nbisL1-mrna-26555, nbisL1-mrna-26581 ... |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-21188, nbisL1-mrna-3140, nbisL1-mrna-9570 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11803, nbisL1-mrna-17606, nbisL1-mrna-6008 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000001l.88, evm.TU.utg000011l.1213 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004721, Maker00012860 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15586, nbisL1-mrna-6480 |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-2304, nbisL1-mrna-2654, nbisL1-mrna-3098 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu14234, populus_peu23555, populus_peu23556 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132622076, gene-LOC132622110, gene-LOC132625247 ... |
| Solanaceae | Solanum chilense | 6 | SOLCI000493100, SOLCI000706800, SOLCI000814900 ... |
| Solanaceae | Solanum pennellii | 7 | gene-LOC107009250, gene-LOC107010463, gene-LOC107010556 ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2049 |