Basic Information
Locus ID:
Ag9G01262
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
50S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 143553696 | 143556452 | + | Ag9G01262 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 27,113.95 Da | 36.98 | 98.98 | -0.07 |
Protein Domain:
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66860.1 | Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain. | 0 |
| RefSeq | XP_017238660.1 | PREDICTED: 50S ribosomal protein L25-like [Daucus carota subsp. sativus] | 0 |
| Q161I5 | Large ribosomal subunit protein bL25 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rplY PE=3 SV=1 | 0 | |
| TrEMBL | A0A164W2F1 | Ribosomal_TL5_C domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021440 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 10.093091 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.422376 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.496838 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.607008 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 5.554992 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.011214 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 4.84659 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.622215 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 8.952726 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 8.904392 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 8.589777 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 7.184124 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 6.415082 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 6.391944 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 3.111188 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 2.522865 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 3.205562 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.345979 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 2.076136 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 1.863755 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 1.750347 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.874737 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.20997 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 4.018428 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 3.135151 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.426012 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 3.072327 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 3.52537 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 3.113544 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.550407 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.811546 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.5872 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 1.287409 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 4.281686 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0.622129 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.789206 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 1.154037 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.847153 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 4.176287 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.747726 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.880096 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0.913933 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 1.155377 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.7537 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 1.254878 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.864501 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 1.690198 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 12.178858 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 9.928137 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 10.545538 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg17464, jg40068, jg7671 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14698 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004537 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g099720, BVRB_6g134520 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12971, Sbi_jg23953, Sbi_jg52896, Sbi_jg7780 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12245, Seu_jg8964 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001120, GOSA_00010263 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33987, Sgl39382, Sgl52128, Sgl57399 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001951, gene:ENSEOMG00000006475 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0006630, CQ.Regalona.r1.5BG0006890 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30206780 |
| Apiaceae | Apium graveolens | 3 | Ag4G01063, Ag9G01262, Ag9G02771 |
| Arecaceae | Cocos nucifera | 3 | COCNU_06G000890, COCNU_06G017520, COCNU_14G010460 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697155, gene-LOC103709224 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2029.V1.1, AsparagusV1_07.2941.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri1G29466, Ftri9G29306 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G23620.2, AT5G66860.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004830m.g.v1.0, Thhalv10026041m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g29800.v2.2, Sp7g21540.v2.2 |
| Brassicaceae | Brassica nigra | 7 | BniB03g013580.2N, BniB04g010650.2N, BniB05g013580.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1439 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1470 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno06g03010, gene.Cymno11g03240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0369s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g34010, gene.Thate05g15250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1514, nbisL1-mrna-6620 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG02.2189, evm.TU.LG02.2387, evm.TU.LG10.1470 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029152, Pov_00029304 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G08463, Lb5G27718 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1152, AH02.2205, BH01.1534, BH02.2280, CH01.1502 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0022980, gene-QOZ80_1BG0073070 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053546, gene-QYE76_063620 |
| Poaceae | Oryza coarctata | 4 | Oco01G013770, Oco02G013900, Oco05G018130, Oco06G018950 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g41030.1, LOC_Os03g41612.1, LOC_Os05g18750.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G153400, gene-BS78_03G181500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0104350, Pt_Chr0104386, Pt_Chr0603185, Pt_Chr0603209 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G016460, Chr03G010170, Chr05G017460, Chr08G010440 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G368200, Tel4E01G129300 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG031760, gene_TRIDC3BG036360 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G212900.1, TraesCS3B02G243200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb219090_P002, Zm00001eb357570_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-20342, nbis-gene-29348, nbis-gene-33837 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g8154, Zma_g939 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.3317, evm.TU.LG05.598, evm.TU.LG16.281 ... |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc03g22880, gene.Posoc04g06300, gene.Posoc04g23880 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_16_RagTag.128, evm.TU.Scaffold_6_RagTag.1910 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17231 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17123, nbisL1-mrna-4404 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11877, nbisL1-mrna-20359 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.1164, evm.TU.utg000022l.415 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007694, Maker00014411 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15530, nbisL1-mrna-3556 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3182, nbisL1-mrna-6721 |
| Salicaceae | Populus euphratica | 4 | populus_peu03627, populus_peu14317, populus_peu14325 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623217, gene-LOC132627001 |
| Solanaceae | Solanum chilense | 2 | SOLCI003512000, SOLCI006709400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003157, gene-LOC107008924 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5432_chr03_+, gene_1316 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2377, TC04G1694 |
| Zosteraceae | Zostera marina | 2 | Zosma03g03060.v3.1, Zosma05g24970.v3.1 |