Basic Information
Locus ID:
Ag9G01224
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
PCS1
Description:
Belongs to the peptidase A1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 139136854 | 139138143 | - | Ag9G01224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.48 | 43,066.96 Da | 37.17 | 78.09 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05476 | pepsin_A_like_plant | 24 | 388 | 7.31891E-67 | IPR034161 |
| Pfam | PF14541 | Xylanase inhibitor C-terminal | 218 | 384 | 8.8E-35 | IPR032799 |
| Pfam | PF14543 | Xylanase inhibitor N-terminal | 27 | 188 | 5.6E-39 | IPR032861 |
| SUPERFAMILY | SSF50630 | Acid proteases | 26 | 389 | 1.2E-79 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 189 | 393 | 3.0E-42 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 18 | 188 | 2.4E-36 | IPR021109 |
| ProSiteProfiles | PS51767 | Peptidase family A1 domain profile. | 25 | 384 | 34.295841 | IPR033121 |
| ProSitePatterns | PS00141 | Eukaryotic and viral aspartyl proteases active site. | 40 | 51 | - | IPR001969 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 31 | 51 | 2.6E-5 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 360 | 375 | 2.6E-5 | IPR001461 |
| PRINTS | PR00792 | Pepsin (A1) aspartic protease family signature | 250 | 261 | 2.6E-5 | IPR001461 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02190.1 | Eukaryotic aspartyl protease family protein. encodes an aspartic protease, has an important role in determining cell fate during embryonic development and in reproduction processes. The loss-of-function mutation of PCS1 causes degeneration of both male and female gametophytes and excessive cell death of developing embryos during torpedo stage. | 0 |
| RefSeq | XP_017216699.1 | PREDICTED: aspartic proteinase PCS1-like [Daucus carota subsp. sativus] | 0 |
| Q9LZL3 | Aspartic proteinase PCS1 OS=Arabidopsis thaliana OX=3702 GN=PCS1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A164T180 | Peptidase A1 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_024058 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 42.41378 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 28.543648 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 16.902719 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 24.38847 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.798784 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.42281 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0.089424 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0.045533 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 15.705529 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 11.417105 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 14.777192 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 8.01625 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 12.891341 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 7.840925 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 2.04618 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 9.701262 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 4.645261 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 9.570734 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 13.267358 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.26746 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 9.341094 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 6.968384 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 4.763498 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 8.909469 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 9.416096 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 19.573124 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 19.002316 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.020714 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 11.396715 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.290741 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.64911 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.97834 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.780432 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.085991 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 8.186711 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.736757 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.965232 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 5.058345 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0.57702 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0.144647 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 3.318952 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0.549388 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 4.010681 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.209357 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 4.420098 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg14852, jg3359, jg9949, jg9950 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23777 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035144 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g025170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21279, Sbi_jg22582 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16466 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016330 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62558, Sgl67105 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018390, gene:ENSEOMG00000022100 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1BG0018600, CQ.Regalona.r1.2AG0020370 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30270390 |
| Apiaceae | Apium graveolens | 3 | Ag10G01179, Ag10G01562, Ag9G01224 |
| Arecaceae | Cocos nucifera | 4 | COCNU_04G001580, COCNU_04G015720, COCNU_12G007980 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103697263, gene-LOC103704155, gene-LOC103715659 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G25582 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G39710.1, AT5G02190.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010977m.g.v1.0, Thhalv10013546m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g21970.v2.2, Sp5g06940.v2.2, Sp6g40250.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g005550.2N, BniB05g031300.2N, BniB06g005130.2N ... |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1181, Cgl08G1158 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g00840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g00170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8208 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.1204, evm.TU.LG02.1757 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006417, Pov_00040047, Pov_00040048 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.4190, AH02.3845, BH01.4506, BH02.3870, BH07.4173 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0039610, gene-QOZ80_1BG0089630 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.3HG0302340.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056321, gene-QYE76_069044 |
| Poaceae | Oryza coarctata | 4 | Oco01G024720, Oco02G025620, Oco05G009430, Oco06G009780 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g62630.1, LOC_Os03g16500.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G402900, gene-BS78_03G333400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G020010, Chr08G022150 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G578100, Tel4E01G366900 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2AG005460, gene_TRIDC3AG052020 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G361500.1.cds1, TraesCS3B02G393900.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb012190_P001, Zm00001eb148210_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-11439 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8984 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.909, evm.TU.LG25.428 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g01140 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1699, evm.TU.Scaffold_4_RagTag.1744 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-25989, nbisL1-mrna-5491 |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-1472, nbisL1-mrna-20170, nbisL1-mrna-2585 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-14194, nbisL1-mrna-3786, nbisL1-mrna-4547 ... |
| Rhizophoraceae | Kandelia candel | 4 | add.evm.TU.utg000005l.67, add.evm.TU.utg000008l.370 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000971, Maker00017298 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-16948, nbisL1-mrna-17540, nbisL1-mrna-18746 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13665, nbisL1-mrna-19554, nbisL1-mrna-9438 |
| Salicaceae | Populus euphratica | 3 | populus_peu06451, populus_peu11313, populus_peu20307 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623883, gene-LOC132630403 |
| Solanaceae | Solanum chilense | 2 | SOLCI002077400, SOLCI003072300 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009539, gene-LOC107029621 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10670, gene_6832 |
| Tamaricaceae | Tamarix chinensis | 2 | TC07G0435, TC08G0812 |
| Zosteraceae | Zostera marina | 1 | Zosma01g16220.v3.1 |