halophFGD

Basic Information

Locus ID: Ag9G01191

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Brca1-associated

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	136464085	136470745	+	Ag9G01191

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.46	38,626.08 Da	37.10	72.91	-0.78

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF02148	Zn-finger in ubiquitin-hydrolases and other protein	73	132	7.4E-18	IPR001607
SUPERFAMILY	SSF57850	RING/U-box	61	137	3.04E-24	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	42	150	1.3E-24	IPR013083
SMART	SM00290	Zf_UBP_1	72	121	2.6E-25	IPR001607
ProSiteProfiles	PS50271	Zinc finger UBP-type profile.	71	132	19.843861	IPR001607
MobiDBLite	mobidb-lite	consensus disorder prediction	299	317	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	296	337	-	-
Coils	Coil	Coil	218	291	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K10632 (BRCA1-associated protein [EC:2.3.2.27])

Pathway:

ko04014 (Ras signaling pathway) map04014 (Ras signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26000.2	zinc finger (C3HC4-type RING finger) family protein.
RefSeq	XP_017254931.1	PREDICTED: BRCA1-associated protein isoform X1 [Daucus carota subsp. sativus]
Swiss-Prot	O80996	BRAP2 RING ZnF UBP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BRIZ2 PE=1 SV=1
TrEMBL	A0A164W4G8	RRM domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021361 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	25.097012	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	22.742733	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	23.602324	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	26.6441	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	24.032974	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	28.888277	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	25.600266	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	27.193953	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	19.939943	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	19.881142	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	18.889948	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	22.480127	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	19.766209	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	20.23785	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	8.076342	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	9.766189	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	8.842995	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	11.291251	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	11.613822	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	9.097726	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	11.641822	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	10.379805	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	9.836171	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	13.816628	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	10.658757	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	11.656799	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	9.044291	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	11.467236	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	10.225611	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	7.472344		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	11.695718		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	10.221948		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	13.933297		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	11.490964		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	13.296713		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	9.064766		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	4.875064		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	8.000734		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	9.316131	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	5.721671	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	7.984895	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	18.655582	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	20.123125	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	27.448338	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	32.524395	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	18.463537	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	21.462214	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	19.730955	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	21.072588	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	19.109457	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg13483, jg30151
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26234, gene_8965
Amaranthaceae	Atriplex hortensis	2	Ah010413, Ah028443
Amaranthaceae	Beta vulgaris	1	BVRB_8g193950
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg11643, Sbi_jg25645, Sbi_jg46752, Sbi_jg6727 ... Sbi_jg9466
Amaranthaceae	Salicornia europaea	2	Seu_jg19150, Seu_jg20897
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00001863, GOSA_00010991
Amaranthaceae	Suaeda glauca	5	Sgl41994, Sgl46769, Sgl56022, Sgl60568, Sgl61215
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000007636, gene:ENSEOMG00000038006 ... gene:ENSEOMG00000039187, gene:ENSEOMG00000039851, gene:ENSEOMG00000052220
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0009090, CQ.Regalona.r1.9BG0009040
Anacardiaceae	Pistacia vera	3	pistato.v30129530, pistato.v30129570, pistato.v30254900
Apiaceae	Apium graveolens	2	Ag3G02757, Ag9G01191
Arecaceae	Cocos nucifera	2	COCNU_11G000060, COCNU_11G008190
Arecaceae	Phoenix dactylifera	2	gene-LOC103706462, gene-LOC103710083
Asparagaceae	Asparagus officinalis	2	AsparagusV1_05.3315.V1.1, AsparagusV1_08.1576.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G32698, Ftri16G26820
Brassicaceae	Arabidopsis thaliana	2	AT2G26000.2, AT2G42160.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10004093m.g.v1.0, Thhalv10018494m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g26300.v2.2, Sp5g35210.v2.2
Brassicaceae	Brassica nigra	2	BniB05g075610.2N, BniB06g011650.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G0597
Casuarinaceae	Casuarina glauca	1	Cgl06G0617
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno02g05440, gene.Cymno03g03720
Dunaliellaceae	Dunaliella salina	1	Dusal.0313s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate07g07880, gene.Thate07g13950
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.787, evm.TU.LG07.934
Plantaginaceae	Plantago ovata	2	Pov_00034532, Pov_00039768
Plumbaginaceae	Limonium bicolor	2	Lb6G31727, Lb7G32914
Poaceae	Echinochloa crus-galli	7	AH07.610, AH09.2502, BH05.1545, BH07.735, BH09.2725 ... CH01.1621, CH09.2922
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0104010, gene-QOZ80_2BG0157310 ... gene-QOZ80_4AG0301680, gene-QOZ80_4BG0332400
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0204960.1, HORVU.MOREX.r3.6HG0568250.1
Poaceae	Lolium multiflorum	2	gene-QYE76_021077, gene-QYE76_046735
Poaceae	Oryza coarctata	4	Oco03G004240, Oco04G004200, Oco04G004210, Oco07G017490
Poaceae	Oryza sativa	2	LOC_Os02g09060.1, LOC_Os04g55480.1
Poaceae	Paspalum vaginatum	3	gene-BS78_04G062500, gene-BS78_06G250900 ... gene-BS78_06G258500
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0202287, Pt_Chr0300720, Pt_Chr0300775, Pt_Chr0302596 ... Pt_Chr0702839
Poaceae	Sporobolus alterniflorus	4	Chr15G025060, Chr22G012520, Chr23G002470, Chr26G016880
Poaceae	Thinopyrum elongatum	2	Tel2E01G873400, Tel6E01G302900
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG072370, gene_TRIDC2BG078350 ... gene_TRIDC2BG078390, gene_TRIDC6AG019920, gene_TRIDC6BG025930
Poaceae	Triticum aestivum	8	TraesCS2A02G515000.1, TraesCS2A02G515200.1 ... TraesCS2B02G543300.1, TraesCS2D02G516500.1, TraesCS2D02G516600.1, TraesCS6A02G145300.2, TraesCS6B02G173500.2, TraesCS6D02G134300.1
Poaceae	Zea mays	2	Zm00001eb068570_P002, Zm00001eb234370_P001
Poaceae	Zoysia japonica	4	nbis-gene-23013, nbis-gene-33573, nbis-gene-47991 ... nbis-gene-6022
Poaceae	Zoysia macrostachya	3	Zma_g12321, Zma_g20553, Zma_g22094
Portulacaceae	Portulaca oleracea	2	evm.TU.LG08.971, evm.TU.LG22.101
Posidoniaceae	Posidonia oceanica	2	gene.Posoc02g04040, gene.Posoc02g23850
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_10_RagTag.57, evm.TU.Scaffold_11_RagTag.191
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-12873, nbisL1-mrna-14257
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-20049, nbisL1-mrna-21313
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-14384, nbisL1-mrna-16497
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000005l.263, evm.TU.utg000033l.38
Rhizophoraceae	Kandelia obovata	2	Maker00010115, Maker00014860
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-16735, nbisL1-mrna-328
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-14460, nbisL1-mrna-19037
Salicaceae	Populus euphratica	4	populus_peu05743, populus_peu14103, populus_peu23216 ... populus_peu23217
Solanaceae	Lycium barbarum	2	gene-LOC132603151, gene-LOC132633320
Solanaceae	Solanum chilense	2	SOLCI002474300, SOLCI003056200
Solanaceae	Solanum pennellii	2	gene-LOC107012390, gene-LOC107024273
Tamaricaceae	Reaumuria soongarica	2	gene_10968, gene_8982
Tamaricaceae	Tamarix chinensis	2	TC08G1442, TC10G1283
Zosteraceae	Zostera marina	2	Zosma04g18000.v3.1, Zosma06g25840.v3.1