Basic Information
Locus ID:
Ag9G01180
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 134814082 | 134814799 | - | Ag9G01180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.88 | 14,363.54 Da | 55.41 | 101.25 | 0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15900.1 | 0 | |
| RefSeq | XP_017257196.1 | PREDICTED: uncharacterized protein LOC108226711 [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164W4S9 | PX domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 5.335186 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 6.503971 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.399145 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 5.914387 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.480464 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.974154 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 2.535693 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.237014 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 34.255085 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 27.489008 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 34.442764 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 28.572914 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.318085 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 31.575815 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 14.799321 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 14.648352 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 23.372347 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 34.083321 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 40.881851 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 22.700251 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 30.733217 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 11.60702 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 8.501892 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 16.361853 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 19.484854 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 30.216839 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 28.065222 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 37.729584 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 31.85541 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 47.717285 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 61.629166 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 59.740871 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 69.155037 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 32.505081 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 80.289116 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 80.821365 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 63.452229 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 64.48587 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 60.827068 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 76.988922 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 114.47226 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 44.357243 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.083278 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 29.72513 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 24.411743 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 38.470276 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 20.633686 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 17.536032 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 17.013613 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 18.925787 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29884 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21406 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010550 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219270 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11588, Sbi_jg46528 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20844 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56380, Sgl61911 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000016711, gene:ENSEOMG00000050239 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009720, CQ.Regalona.r1.9AG0014910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30128510 |
| Apiaceae | Apium graveolens | 1 | Ag9G01180 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G018630 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2329.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri4G26162 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021721m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g14230.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g053890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0331 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0345 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g11430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0105s00015.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03430 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014819 |
| Poaceae | Echinochloa crus-galli | 2 | BH07.3655, CH07.3730 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0149530, gene-QOZ80_2BG0204710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0626850.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G024610, Oco04G025090 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g56030.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G310600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0206060, Pt_Chr0206137 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G000230, Chr0G032930, Chr15G001420 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G670300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG055660, gene_TRIDC6BG065110 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G372600.1, TraesCS6B02G410500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb192090_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39877, nbis-gene-8397 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14648, Zma_g17362 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1263, evm.TU.LG11.610 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g04170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.400 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28121 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7844 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019132 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7265 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23368, nbisL1-mrna-23369 |
| Salicaceae | Populus euphratica | 1 | populus_peu02589 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633007 |
| Solanaceae | Solanum chilense | 1 | SOLCI007110600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014379 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19242_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2220 |
| Zosteraceae | Zostera marina | 1 | Zosma01g32600.v3.1 |