halophFGD

Basic Information

Locus ID: Ag9G01178

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	134780781	134783716	+	Ag9G01178

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.15	45,199.35 Da	45.05	95.61	-0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd14066	STKc_IRAK	84	351	4.79663E-103	-
Pfam	PF00069	Protein kinase domain	79	346	1.4E-43	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	61	349	1.64E-79	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	47	153	9.2E-34	-
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	154	367	4.3E-60	-
SMART	SM00220	serkin_6	78	349	1.0E-28	IPR000719
ProSiteProfiles	PS50011	Protein kinase domain profile.	78	366	37.233917	IPR000719
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	200	212	-	IPR008271
ProSitePatterns	PS00107	Protein kinases ATP-binding region signature.	84	106	-	IPR017441
MobiDBLite	mobidb-lite	consensus disorder prediction	360	403	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	388	403	-	-
Coils	Coil	Coil	343	363	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G52540.1	Protein kinase superfamily protein.
RefSeq	XP_017254485.1	PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Daucus carota subsp. sativus]
Swiss-Prot	Q9LSC2	PTI1-like tyrosine-protein kinase At3g15890 OS=Arabidopsis thaliana OX=3702 GN=At3g15890 PE=2 SV=1
TrEMBL	A0A164W4W4	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_021349 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	16.108923	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	16.108768	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	15.320476	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	15.53034	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	14.355442	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	25.584236	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	18.508289	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	20.33255	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	38.694809	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	37.964207	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	38.048325	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	39.255642	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	30.634727	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	34.183395	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	13.411194	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	15.647179	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	22.013868	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	30.977613	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	27.516529	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	33.968349	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	34.936802	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	57.099525	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	59.480198	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	68.938873	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	56.430416	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	40.520237	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	37.464466	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	31.002089	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	38.244972	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	10.697408		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	15.636004		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	15.512919		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	24.774019		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	21.563616		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	24.074577		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	18.085648		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	8.147548		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	15.363865		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	21.716154	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	20.049305	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	9.142997	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	104.371147	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	46.74416	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	104.82653	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	98.939583	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	113.992897	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	63.327797	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	25.78916	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	37.530029	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	36.637829	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13497, jg14055, jg25440, jg4060
Aizoaceae	Mesembryanthemum crystallinum	1	gene_26212
Amaranthaceae	Atriplex hortensis	1	Ah010555
Amaranthaceae	Beta vulgaris	1	BVRB_9g219230
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11585, Sbi_jg46525
Amaranthaceae	Salicornia europaea	1	Seu_jg20841
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00005157
Amaranthaceae	Suaeda glauca	2	Sgl56384, Sgl61915
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000018788, gene:ENSEOMG00000038836 ... gene:ENSEOMG00000050646
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0009760, CQ.Regalona.r1.9AG0014870
Anacardiaceae	Pistacia vera	3	pistato.v30128430, pistato.v30181900, pistato.v30263930
Apiaceae	Apium graveolens	4	Ag10G02655, Ag10G02769, Ag2G02715, Ag9G01178
Arecaceae	Cocos nucifera	4	COCNU_01G010560, COCNU_01G018700, COCNU_11G000510 ... scaffold003476G000010
Arecaceae	Phoenix dactylifera	5	gene-LOC103701699, gene-LOC103704325, gene-LOC103710111 ... gene-LOC103711493, gene-LOC103718553
Asparagaceae	Asparagus officinalis	5	AsparagusV1_05.3280.V1.1, AsparagusV1_05.3460.V1.1 ... AsparagusV1_05.3461.V1.1, AsparagusV1_08.1570.V1.1, AsparagusV1_08.3.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G29499, Ftri18G11561, Ftri1G31513, Ftri4G24457
Brassicaceae	Arabidopsis thaliana	2	AT1G52540.1, AT3G15890.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10011602m.g.v1.0, Thhalv10020984m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g39090.v2.2, Sp3g14220.v2.2
Brassicaceae	Brassica nigra	4	BniB04g057350.2N, BniB06g028160.2N, BniB07g028540.2N ... BniB07g053900.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq02G2053, Ceq03G1189
Casuarinaceae	Casuarina glauca	3	Cgl02G0340, Cgl02G2121, Cgl03G1296
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno13g02000, gene.Cymno17g04780
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate01g03440, gene.Thate05g18560
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-3752, nbisL1-mrna-710
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.2240, evm.TU.LG01.494, evm.TU.LG07.448
Plantaginaceae	Plantago ovata	3	Pov_00000552, Pov_00012594, Pov_00020228
Plumbaginaceae	Limonium bicolor	1	Lb3G18287
Poaceae	Echinochloa crus-galli	12	AH03.2712, AH06.2508, AH06.373, AH07.626, BH03.2853 ... BH06.2310, BH06.495, BH07.752, CH01.1605, CH03.3060, CH06.2534, CH06.493
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_2AG0104180, gene-QOZ80_2BG0157530 ... gene-QOZ80_6AG0509970, gene-QOZ80_6AG0528460, gene-QOZ80_6BG0462220, gene-QOZ80_6BG0482470, gene-QOZ80_6BG0500410
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.5HG0498720.1, HORVU.MOREX.r3.6HG0576010.1 ... HORVU.MOREX.r3.7HG0656030.1, HORVU.MOREX.r3.7HG0740660.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_006833, gene-QYE76_021140, gene-QYE76_028409 ... gene-QYE76_036503, gene-QYE76_037118
Poaceae	Oryza coarctata	6	Oco03G004380, Oco04G004390, Oco11G003150, Oco11G014270 ... Oco12G003120, Oco12G014430
Poaceae	Oryza sativa	3	LOC_Os02g09359.1, LOC_Os06g07070.1, LOC_Os06g44430.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G252400, gene-BS78_04G065100 ... gene-BS78_10G055700, gene-BS78_10G212700
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0202265, Pt_Chr0402065, Pt_Chr0601126, Pt_Chr0700004 ... Pt_Chr0700992
Poaceae	Sporobolus alterniflorus	12	Chr02G031230, Chr05G008950, Chr06G031520, Chr07G015680 ... Chr08G006510, Chr0G000440, Chr10G019400, Chr11G003230, Chr11G022090, Chr14G002400, Chr21G001500, Chr21G010520
Poaceae	Thinopyrum elongatum	4	Tel5E01G508300, Tel6E01G347700, Tel7E01G259500 ... Tel7E01G851000
Poaceae	Triticum dicoccoides	7	gene_TRIDC5AG047210, gene_TRIDC6AG025240 ... gene_TRIDC6BG031460, gene_TRIDC7AG015160, gene_TRIDC7AG069590, gene_TRIDC7BG004440, gene_TRIDC7BG064040
Poaceae	Triticum aestivum	12	TraesCS5A02G319400.1, TraesCS5B02G319800.1 ... TraesCS5D02G325600.1, TraesCS6A02G180900.1, TraesCS6B02G204600.3, TraesCS6D02G164200.2, TraesCS7A02G129300.1, TraesCS7A02G497600.1.cds1, TraesCS7B02G029200.1, TraesCS7B02G404400.1.cds1, TraesCS7D02G128300.1, TraesCS7D02G484900.1.cds1
Poaceae	Zea mays	6	Zm00001eb206490_P002, Zm00001eb234490_P002 ... Zm00001eb271540_P006, Zm00001eb319540_P002, Zm00001eb375560_P001, Zm00001eb389550_P002
Poaceae	Zoysia japonica	6	nbis-gene-33562, nbis-gene-35293, nbis-gene-35294 ... nbis-gene-49579, nbis-gene-5093, nbis-gene-9860
Poaceae	Zoysia macrostachya	5	Zma_g12329, Zma_g29167, Zma_g30019, Zma_g30926, Zma_g32213
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1254, evm.TU.LG07.1784, evm.TU.LG11.602 ... evm.TU.LG15.1390
Posidoniaceae	Posidonia oceanica	1	gene.Posoc10g04540
Rhizophoraceae	Bruguiera sexangula	8	evm.TU.Scaffold_10_RagTag.1169, evm.TU.Scaffold_4_RagTag.186 ... evm.TU.Scaffold_10_RagTag.228, evm.TU.Scaffold_10_RagTag.229, evm.TU.Scaffold_11_RagTag.1307, evm.TU.Scaffold_18_RagTag.410, evm.TU.Scaffold_4_RagTag.2104, evm.TU.Scaffold_4_RagTag.2105
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-12616, nbisL1-mrna-13342, nbisL1-mrna-29164 ... nbisL1-mrna-6806
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-1695, nbisL1-mrna-1696, nbisL1-mrna-1749 ... nbisL1-mrna-2924, nbisL1-mrna-6830
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-16652, nbisL1-mrna-2107, nbisL1-mrna-21766 ... nbisL1-mrna-7849
Rhizophoraceae	Kandelia candel	5	add.evm.TU.utg000008l.40, evm.TU.utg000004l.326 ... evm.TU.utg000010l.331, evm.TU.utg000023l.208, evm.TU.utg000033l.153
Rhizophoraceae	Kandelia obovata	4	Maker00001374, Maker00004027, Maker00008527, Maker00018884
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16322, nbisL1-mrna-17659, nbisL1-mrna-23378 ... nbisL1-mrna-7271
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-21401, nbisL1-mrna-23381, nbisL1-mrna-6223
Salicaceae	Populus euphratica	6	populus_peu02579, populus_peu12119, populus_peu12142 ... populus_peu29201, populus_peu30557, populus_peu33498
Solanaceae	Lycium barbarum	3	gene-LOC132602027, gene-LOC132633003, gene-LOC132634003
Solanaceae	Solanum chilense	3	SOLCI001728200, SOLCI005717900, SOLCI006322800
Solanaceae	Solanum pennellii	3	gene-LOC107014126, gene-LOC107015427, gene-LOC107024726
Tamaricaceae	Reaumuria soongarica	1	gene_10151
Tamaricaceae	Tamarix chinensis	1	TC08G2214
Zosteraceae	Zostera marina	1	Zosma05g19260.v3.1