Basic Information
Locus ID:
Ag9G01172
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
PIFI
Description:
post-illumination chlorophyll fluorescence increase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 134312499 | 134314881 | + | Ag9G01172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 29,944.79 Da | 34.85 | 75.96 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15840.5 | post-illumination chlorophyll fluorescence increase. Encodes a chloroplast-targeted protein localized in the stroma that is a novel component essential for NDH-mediated non-photochemical reduction of the plastoquinone pool in chlororespiratory electron transport. | 0 |
| RefSeq | XP_017255403.1 | PREDICTED: uncharacterized protein LOC108225099 [Daucus carota subsp. sativus] | 0 |
| Q9LVZ5 | Protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PIFI PE=2 SV=1 | 0 | |
| TrEMBL | A0A6L5B7J1 | Post-illumination chlorophyll fluorescence increase OS=Apium graveolens OX=4045 GN=AG4045_027450 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 34.88485 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 42.895721 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 27.902443 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 28.668663 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 25.385204 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 34.715832 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 20.317041 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 20.713223 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 24.569544 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 24.769844 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 25.908995 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 22.185286 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 26.321239 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 24.191408 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 40.96973 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 37.402714 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 42.773018 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 57.986435 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 97.511124 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 76.825722 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 85.013939 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 23.758968 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 13.12791 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 24.794571 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 32.505516 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 54.21508 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 57.237129 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 115.751686 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 45.447746 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 297.913788 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 236.256027 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 207.710022 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 330.089905 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 163.642441 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 282.080566 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 577.504456 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 744.589294 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 679.58252 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 34.804604 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 65.738739 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 103.651764 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 53.602497 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 46.469719 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 56.550686 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 51.103439 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 54.454056 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 37.991798 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 47.12014 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 28.525963 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 32.151989 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18247, jg25435 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26209 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010560 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219510 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11576, Sbi_jg46517 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20829 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005164 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55917, Sgl61923 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015634, gene:ENSEOMG00000037679 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009820, CQ.Regalona.r1.9AG0014800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30128390 |
| Apiaceae | Apium graveolens | 3 | Ag9G01172, Ag9G01175, AgUnG01436 |
| Arecaceae | Cocos nucifera | 1 | scaffold000460G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697596 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2491.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G23407 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G15840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022443m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g14150.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g049030.2N, BniB07g028450.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0322 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0336, Cgl09G1056 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g01800 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g32410, gene.Thate02g32420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.487 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027747 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16324 |
| Poaceae | Echinochloa crus-galli | 2 | AH01.1448, CH01.1729 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0227290, gene-QOZ80_3BG0272400 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0721780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067105 |
| Poaceae | Oryza coarctata | 3 | Oco05G017520, Oco06G018210, Oco10G012170 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g38950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G164100 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102984 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G014140, Chr07G022640 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G655000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG053860, gene_TRIDC7BG046610 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G386300.1, TraesCS7B02G289200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb049190_P001, Zm00001eb219530_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20169 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3347 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1258, evm.TU.LG11.606 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1171 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6808 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-146 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21764 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.328 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004289 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16324 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-21190, nbisL1-mrna-21398 |
| Salicaceae | Populus euphratica | 1 | populus_peu02575 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132603649 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007380 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19229_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2208 |