Basic Information
Locus ID:
Ag9G01096
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Short Name:
HSP101
Description:
Chaperone protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 126168506 | 126172839 | + | Ag9G01096 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 100,981.95 Da | 35.75 | 97.20 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 572 | 767 | 4.40538E-21 | - |
| CDD | cd00009 | AAA | 183 | 338 | 6.94943E-23 | - |
| Pfam | PF17871 | AAA lid domain | 346 | 443 | 4.8E-35 | IPR041546 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 598 | 762 | 1.0E-52 | IPR003959 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 17 | 62 | 1.1E-7 | IPR004176 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 97 | 147 | 3.5E-9 | IPR004176 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 205 | 318 | 1.9E-13 | IPR003959 |
| Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 768 | 847 | 4.9E-20 | IPR019489 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 162 | 546 | 1.7E-95 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 547 | 849 | 9.77E-78 | IPR027417 |
| SUPERFAMILY | SSF81923 | Double Clp-N motif | 5 | 158 | 6.28E-26 | IPR036628 |
| Gene3D | G3DSA:3.40.50.300 | - | 151 | 344 | 1.1E-79 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 345 | 545 | 2.0E-68 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 768 | 866 | 7.5E-24 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 551 | 767 | 1.7E-86 | IPR027417 |
| Gene3D | G3DSA:1.10.1780.10 | - | 4 | 149 | 1.5E-35 | IPR036628 |
| SMART | SM00382 | AAA_5 | 200 | 345 | 9.6E-11 | IPR003593 |
| SMART | SM01086 | ClpB_D2_small_2 | 768 | 859 | 8.1E-25 | IPR019489 |
| SMART | SM00382 | AAA_5 | 598 | 769 | 3.7E-10 | IPR003593 |
| ProSiteProfiles | PS51903 | Clp repeat (R) domain profile. | 3 | 148 | 38.115612 | IPR004176 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 296 | 308 | - | IPR018368 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 632 | 650 | - | IPR028299 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 709 | 723 | 2.3E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 602 | 620 | 2.3E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 647 | 665 | 2.3E-40 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 676 | 694 | 2.3E-40 | IPR001270 |
| Coils | Coil | Coil | 407 | 441 | - | - |
| Coils | Coil | Coil | 254 | 274 | - | - |
| Coils | Coil | Coil | 464 | 494 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74310.1 | heat shock protein 101. Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature. | 0 |
| RefSeq | XP_017241803.1 | PREDICTED: chaperone protein ClpB1 [Daucus carota subsp. sativus] | 0 |
| P42730 | Chaperone protein ClpB1 OS=Arabidopsis thaliana OX=3702 GN=CLPB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A166AK83 | Clp R domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_010146 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 733.97699 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 502.388885 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 1004.738586 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 733.405884 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 514.863525 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 1036.177734 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 563.486328 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1492.465698 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 110.554733 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 533.936401 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 95.407387 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 32.067413 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 27.47328 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 22.437805 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 8.592336 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 10.137848 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 10.642236 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 4.130837 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 6.152326 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 3.840006 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 5.70015 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 10.487767 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 6.074076 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 7.206222 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 7.895933 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 10.326683 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 9.48909 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 7.6868 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 7.748473 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 3.144768 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 1.456055 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.714368 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 72.514275 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 46.733917 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 138.713242 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.532363 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 11.942316 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 8.232689 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 1.417651 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.156987 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 1.044396 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 99.892563 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 79.095551 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 4.741352 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 3.294157 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 45.621696 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.754745 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 10.303337 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 8.801095 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 7.682999 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology