Basic Information
Locus ID:
Ag9G00938
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 101870238 | 101876384 | - | Ag9G00938 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 95,983.06 Da | 42.03 | 72.77 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12490 | Breast carcinoma amplified sequence 3 | 515 | 753 | 2.8E-72 | IPR022175 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 81 | 465 | 7.32E-13 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 343 | 503 | 1.2E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 422 | 463 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 405 | 9.8E-4 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 768 | 813 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 879 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54730.1 | homolog of yeast autophagy 18 (ATG18) F. | 0 |
| RefSeq | XP_017258405.1 | PREDICTED: autophagy-related protein 18f [Daucus carota subsp. sativus] | 0 |
| Q9FH32 | Autophagy-related protein 18f OS=Arabidopsis thaliana OX=3702 GN=ATG18F PE=2 SV=1 | 0 | |
| TrEMBL | A0A161XBZ1 | BCAS3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022522 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 17.491495 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 20.586697 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 31.26453 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 30.733824 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 30.924082 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 50.827988 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 48.477551 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 57.031265 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.191332 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 22.492546 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 24.45566 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.921476 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 20.258541 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 19.047924 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 19.817295 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 17.928423 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 18.057743 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 23.642817 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 17.800823 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 23.923725 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 26.55592 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 21.792322 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 20.732531 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.260159 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.572769 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 29.921776 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 23.575443 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 22.610315 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 29.033346 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 19.938877 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 23.177368 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 17.668106 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 27.990324 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 19.282497 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 27.640999 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 19.429369 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.77379 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 16.125294 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 14.04483 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 21.156824 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 13.8774 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 23.779514 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 33.078007 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 45.544693 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 48.37558 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 23.329756 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 44.070366 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 18.24729 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.204416 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.222672 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg19400, jg24525, jg38342 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12362 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008510 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009659, gene:ENSEOMG00000027663 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0021370, CQ.Regalona.r1.4BG0022250 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30157910 |
| Apiaceae | Apium graveolens | 1 | Ag9G00938 |
| Arecaceae | Cocos nucifera | 2 | scaffold001175G000020, scaffold004783G000070 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696161, gene-LOC103714838 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.937.V1.1, AsparagusV1_07.3899.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G12168, Ftri2G25341 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012811m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16670.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g033320.2N, BniB05g034640.2N, BniB08g015770.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1232 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1371 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g03940, gene.Thate05g23080 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1787 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00031598 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G08028, Lb2G10821, Lb2G10825 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3519, BH02.3435, CH02.2978 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0036130, gene-QOZ80_1BG0086130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0294310.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_056034, gene-QYE76_056075 |
| Poaceae | Oryza coarctata | 2 | Oco01G022160, Oco02G022730 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g57720.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G301100, gene-BS78_K023100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601671, Pt_Chr0601684 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G007660, Chr03G017820, Chr05G025890 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G517300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG046640, gene_TRIDC3BG053010 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G324900.2, TraesCS3B02G353900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb151200_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31286 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g11304 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.2016, evm.TU.LG14.1200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.432, evm.TU.Scaffold_9_RagTag.300 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22028 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5313, nbisL1-mrna-5976 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-10396, nbisL1-mrna-7197 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.366, evm.TU.utg000006l.470 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009361, Maker00014108 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6821 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12635 |
| Salicaceae | Populus euphratica | 3 | populus_peu00382, populus_peu17420, populus_peu17421 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618914 |
| Solanaceae | Solanum chilense | 2 | SOLCI000270200, SOLCI003875700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007709, gene-LOC107026162 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24835_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2859 |
| Zosteraceae | Zostera marina | 1 | Zosma03g31800.v3.1 |