Basic Information
Locus ID:
Ag9G00930
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 101054636 | 101057883 | + | Ag9G00930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 45,437.07 Da | 49.65 | 83.98 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 97 | 357 | 3.06447E-88 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 93 | 349 | 3.3E-50 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 78 | 360 | 1.48E-74 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 64 | 166 | 9.7E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 167 | 381 | 8.6E-57 | - |
| SMART | SM00220 | serkin_6 | 91 | 358 | 4.2E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 91 | 358 | 38.732121 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 211 | 223 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 26 | - | - |
| Coils | Coil | Coil | 368 | 395 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54590.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_017254856.1 | PREDICTED: calcium/calmodulin-regulated receptor-like kinase 1 [Daucus carota subsp. sativus] | 0 |
| Q9FIU5 | Calcium/calmodulin-regulated receptor-like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRLK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164VCA1 | Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022514 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 6.417021 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 7.692753 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 13.486451 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 13.205457 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 14.364262 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 3.952597 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 5.717127 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 1.624341 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 21.946558 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.824507 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 23.197065 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 20.945625 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 17.199404 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 14.955197 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.844103 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 13.375124 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 13.750804 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 12.18475 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 8.250567 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 6.812971 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 6.929496 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 20.081203 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 25.100046 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 19.598665 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 20.151119 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.772199 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 15.49099 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 6.823625 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 12.79776 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.100422 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 2.567731 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 2.042151 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 3.683698 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 15.609928 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 6.683368 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.276585 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.805257 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 1.547071 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 5.089853 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 1.394835 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.882799 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 3.29736 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 5.237725 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 2.888859 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 2.90062 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 4.944454 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.979995 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 19.702452 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 22.103022 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 20.12388 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19409, jg24516 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7379 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah008447 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18826, Sbi_jg37267 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5079 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007016 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl22921, Sgl22963, Sgl28023 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000028631, gene:ENSEOMG00000028931 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0021110, CQ.Regalona.r1.4BG0021310 |
| Apiaceae | Apium graveolens | 1 | Ag9G00930 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G003780 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103696700, gene-LOC103709977, gene-LOC103715278 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2627.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri14G21817, Ftri2G10771 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G54590.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013594m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g16550.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g033100.2N, BniB05g034540.2N, BniB08g015850.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1217 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1357 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g15590, gene.Cymno17g00270 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g18980 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4820 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG05.1771, evm.TU.LG12.632 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008940 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G03302, Lb1G03310, Lb2G11358 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.274, BH08.263, CH08.319 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0616730, gene-QOZ80_8BG0644320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0701970.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033168 |
| Poaceae | Oryza coarctata | 2 | Oco15G001660, Oco16G001780 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g04420.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G037500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402505 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr16G000740, Chr17G000710, Chr29G011910 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G519500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG042890, gene_TRIDC7BG034140 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G307400.1, TraesCS7B02G207700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb416790_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-41522 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23584 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.2028, evm.TU.LG02.1685, evm.TU.LG09.233 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g07820, gene.Posoc10g12170 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.400 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-10976, nbisL1-mrna-10991 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14913 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10419 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.490 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013392 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13285 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23552 |
| Salicaceae | Populus euphratica | 3 | populus_peu00400, populus_peu17438, populus_peu17458 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132618273 |
| Solanaceae | Solanum chilense | 1 | SOLCI002639300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024316 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_13182, gene_17827 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2845 |
| Zosteraceae | Zostera marina | 3 | Zosma03g24830.v3.1, Zosma04g21850.v3.1, Zosma587g00010.v3.1 |