Basic Information
Locus ID:
Ag9G00896
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 93618552 | 93620123 | - | Ag9G00896 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 48,796.94 Da | 40.92 | 92.62 | 0.03 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017222994.1 | PREDICTED: F-box protein At5g07610-like [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A164XAM9 | FBA_3 domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_016169 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 3.678945 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 4.156783 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 4.802797 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 3.910149 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 4.344062 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 6.190733 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 7.481836 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 7.831831 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 4.460543 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 4.069142 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 4.166862 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.165426 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 3.981964 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 3.272806 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 1.256933 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 1.30156 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 1.844847 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 2.769636 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 1.479556 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 2.381221 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 4.289505 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 3.3986 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 3.819713 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 2.310206 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 2.920071 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 2.50565 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 2.868733 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 2.210588 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 1.937413 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 1.821126 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.927851 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 1.162743 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 7.329456 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 3.097092 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 5.960145 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 2.594282 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 2.42874 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 2.711707 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0.704196 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0.705753 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0.505381 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 1.144757 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 3.010427 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 6.032227 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 4.959341 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 1.866856 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 4.200422 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 1.725416 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 3.783317 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 1.613109 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 12 | jg10115, jg13810, jg14130, jg17275, jg17276, jg17277, jg2439 ... |
| Aizoaceae | Mesembryanthemum crystallinum | 5 | gene_14413, gene_14414, gene_14893, gene_1984, gene_9907 |
| Amaranthaceae | Atriplex hortensis | 7 | Ah004028, Ah004029, Ah004033, Ah004034, Ah030906, Ah033291 ... |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_2g030420, BVRB_5g104470, BVRB_5g104480 |
| Amaranthaceae | Salicornia bigelovii | 7 | Sbi_jg16415, Sbi_jg24176, Sbi_jg24177, Sbi_jg27434 ... |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg12024, Seu_jg22737, Seu_jg7899 |
| Amaranthaceae | Suaeda aralocaspica | 4 | GOSA_00008079, GOSA_00010768, GOSA_00010769, GOSA_00016280 |
| Amaranthaceae | Suaeda glauca | 12 | Sgl25015, Sgl25019, Sgl30158, Sgl30162, Sgl52391, Sgl57680 ... |
| Amaranthaceae | Chenopodium album | 13 | gene:ENSEOMG00000005584, gene:ENSEOMG00000007608 ... |
| Amaranthaceae | Chenopodium quinoa | 15 | CQ.Regalona.r1.1BG0021120, CQ.Regalona.r1.2AG0023060 ... |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30187460, pistato.v30187480, pistato.v30187490 ... |
| Apiaceae | Apium graveolens | 26 | Ag10G00383, Ag11G03062, Ag2G02603, Ag2G02604, Ag2G02605 ... |
| Arecaceae | Cocos nucifera | 3 | COCNU_08G004160, COCNU_08G004170, contig69541135G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711934 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1771.V1.1 |
| Asteraceae | Flaveria trinervia | 7 | Ftri18G18467, Ftri18G22214, Ftri18G29897, Ftri3G18437 ... |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07610.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015553m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB08g003310.2N, BniB08g003330.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1108 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-11405, nbisL1-mrna-11453 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.783 |
| Plantaginaceae | Plantago ovata | 41 | Pov_00000383, Pov_00002431, Pov_00002432, Pov_00002516 ... |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G21819, Lb5G27822 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.1487, CH02.1704, CH02.1706 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0014950, gene-QOZ80_1AG0014960 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G015950, Oco04G016580, Oco04G016590 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g41910.1, LOC_Os02g41930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_K252200 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G022150, Chr02G022170, Chr03G007470, Chr05G013010 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10238 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG10.942, evm.TU.LG15.937, evm.TU.LG16.1338 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.1687 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-12434, nbisL1-mrna-12545, nbisL1-mrna-18536 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18621, nbisL1-mrna-6387 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-13611 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.50 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012024 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17668, nbisL1-mrna-22082 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-12375 |
| Salicaceae | Populus euphratica | 13 | populus_peu03087, populus_peu04414, populus_peu05785 ... |
| Solanaceae | Lycium barbarum | 13 | gene-LOC132603319, gene-LOC132603322, gene-LOC132609885 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002946500, SOLCI003651200, SOLCI004256900 |
| Solanaceae | Solanum pennellii | 6 | gene-LOC107012822, gene-LOC107017347, gene-LOC107019311 ... |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.12658_chr02_+, STRG.16278_chr06_+, STRG.964_chr01_- |
| Tamaricaceae | Tamarix chinensis | 4 | TC01G1522, TC02G3321, TC09G0346, TC10G0811 |