halophFGD

Basic Information

Locus ID: Ag9G00893

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Short Name: OTC

Description: Belongs to the ATCase OTCase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	92995422	92998775	+	Ag9G00893

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.17	41,794.74 Da	45.45	89.08	-0.06

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	224	374	6.7E-56	IPR006131
Pfam	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	77	218	8.1E-47	IPR006132
SUPERFAMILY	SSF53671	Aspartate/ornithine carbamoyltransferase	76	378	4.06E-105	IPR036901
Gene3D	G3DSA:3.40.50.1370	Aspartate/ornithine carbamoyltransferase	208	364	2.7E-119	IPR036901
Gene3D	G3DSA:3.40.50.1370	Aspartate/ornithine carbamoyltransferase	79	373	2.7E-119	IPR036901
TIGRFAM	TIGR00658	orni_carb_tr: ornithine carbamoyltransferase	77	377	8.7E-117	IPR002292
PRINTS	PR00100	Aspartate/ornithine carbamoyltransferase superfamily signature	342	365	2.4E-24	IPR006130
PRINTS	PR00100	Aspartate/ornithine carbamoyltransferase superfamily signature	330	339	2.4E-24	IPR006130
PRINTS	PR00100	Aspartate/ornithine carbamoyltransferase superfamily signature	123	142	2.4E-24	IPR006130
PRINTS	PR00100	Aspartate/ornithine carbamoyltransferase superfamily signature	205	216	2.4E-24	IPR006130
PRINTS	PR00102	Ornithine carbamoyltransferase signature	356	367	2.2E-27	IPR002292
PRINTS	PR00102	Ornithine carbamoyltransferase signature	294	304	2.2E-27	IPR002292
PRINTS	PR00102	Ornithine carbamoyltransferase signature	121	135	2.2E-27	IPR002292
PRINTS	PR00102	Ornithine carbamoyltransferase signature	194	208	2.2E-27	IPR002292
PRINTS	PR00102	Ornithine carbamoyltransferase signature	154	167	2.2E-27	IPR002292
Hamap	MF_01109	Ornithine carbamoyltransferase, catabolic [argI].	76	378	73.431732	IPR024904

Gene Ontology

Biological Process:

GO:0006520 (amino acid metabolic process) GO:0006591 (ornithine metabolic process)

Molecular Function:

GO:0004585 (ornithine carbamoyltransferase activity) GO:0016597 (amino acid binding) GO:0016743 (carboxyl- or carbamoyltransferase activity)

KEGG Pathway

KO Term:

K00611 (ornithine carbamoyltransferase [EC:2.1.3.3])

Pathway:

ko00220 (Arginine biosynthesis) map00220 (Arginine biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites) ko01230 (Biosynthesis of amino acids) map01230 (Biosynthesis of amino acids)

Module:

M00029 (Urea cycle) M00844 (Arginine biosynthesis, ornithine => arginine)

Reaction:

R01398 (Carbamoyl phosphate + L-Ornithine <=> Orthophosphate + L-Citrulline)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G75330.1	ornithine carbamoyltransferase.
RefSeq	XP_017259192.1	PREDICTED: ornithine carbamoyltransferase, chloroplastic [Daucus carota subsp. sativus]
Swiss-Prot	O50039	Ornithine transcarbamylase, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OTC PE=1 SV=2
TrEMBL	A0A164VD45	ornithine carbamoyltransferase OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022470 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	58.75507	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	42.238327	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	37.187637	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	33.935101	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	41.399166	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	27.595966	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	27.024225	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	20.513988	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	54.054298	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	45.120171	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	47.091492	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	57.78635	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	55.485638	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	54.653732	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	22.696924	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	34.58704	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	29.911005	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	39.150238	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	40.893646	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	40.29158	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	44.908379	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	42.126629	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	46.982727	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	54.941959	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	51.375366	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	41.731636	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	39.99102	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	44.382008	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	48.870495	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	33.588409		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	38.71249		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	43.927467		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	50.073902		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	49.491127		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	51.117237		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	53.387424		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	35.760101		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	43.287823		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	57.13002	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	48.532188	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	32.200035	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	33.297577	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	28.367266	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	47.389984	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	34.006668	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	37.753891	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	31.519848	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	43.808449	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	35.647228	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	35.750923	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg22252
Aizoaceae	Mesembryanthemum crystallinum	1	gene_2899
Amaranthaceae	Atriplex hortensis	1	Ah019364
Amaranthaceae	Beta vulgaris	1	BVRB_3g056930
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg15237, Sbi_jg56048
Amaranthaceae	Salicornia europaea	1	Seu_jg26532
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00006309
Amaranthaceae	Suaeda glauca	2	Sgl01729, Sgl06882
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000014726, gene:ENSEOMG00000031774 ... gene:ENSEOMG00000043604
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0009740, CQ.Regalona.r1.3BG0009900
Anacardiaceae	Pistacia vera	1	pistato.v30046690
Apiaceae	Apium graveolens	1	Ag9G00893
Arecaceae	Cocos nucifera	1	COCNU_13G000720
Arecaceae	Phoenix dactylifera	1	gene-LOC103699579
Asparagaceae	Asparagus officinalis	1	AsparagusV1_01.2712.V1.1
Asteraceae	Flaveria trinervia	1	Ftri16G16124
Brassicaceae	Arabidopsis thaliana	1	AT1G75330.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10018722m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g30470.v2.2
Brassicaceae	Brassica nigra	2	BniB05g071810.2N, BniB06g048570.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G1011
Casuarinaceae	Casuarina glauca	1	Cgl03G1096
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno05g02730
Dunaliellaceae	Dunaliella salina	1	Dusal.0285s00010.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g09010
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-1327
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.600
Plantaginaceae	Plantago ovata	1	Pov_00038470
Plumbaginaceae	Limonium bicolor	2	Lb1G07343, Lb1G07345
Poaceae	Echinochloa crus-galli	3	AH07.3142, BH07.2973, CH07.3043
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_2AG0142430, gene-QOZ80_2BG0197920
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.6HG0607460.1
Poaceae	Oryza coarctata	2	Oco03G019250, Oco04G020030
Poaceae	Oryza sativa	1	LOC_Os02g47590.1
Poaceae	Paspalum vaginatum	1	gene-BS78_04G247200
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0203923
Poaceae	Sporobolus alterniflorus	3	Chr06G004160, Chr09G022300, Chr15G005560
Poaceae	Thinopyrum elongatum	1	Tel6E01G499100
Poaceae	Triticum dicoccoides	2	gene_TRIDC6AG041750, gene_TRIDC6BG048710
Poaceae	Triticum aestivum	3	TraesCS6A02G272200.1, TraesCS6B02G299700.1 ... TraesCS6D02G252300.1
Poaceae	Zea mays	3	Zm00001eb188330_P001, Zm00001eb252020_P002 ... Zm00001eb403320_P001
Poaceae	Zoysia japonica	1	nbis-gene-8994
Poaceae	Zoysia macrostachya	1	Zma_g14226
Portulacaceae	Portulaca oleracea	2	evm.TU.LG05.1403, evm.TU.LG07.1479
Posidoniaceae	Posidonia oceanica	1	gene.Posoc01g05980
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_9_RagTag.613
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-21603
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2817
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-7410
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000003l.201
Rhizophoraceae	Kandelia obovata	1	Maker00017568
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-1698
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-5426
Salicaceae	Populus euphratica	1	populus_peu15241
Solanaceae	Lycium barbarum	2	gene-LOC132604145, gene-LOC132628044
Solanaceae	Solanum chilense	2	SOLCI002962700, SOLCI003607700
Solanaceae	Solanum pennellii	2	gene-LOC107007504, gene-LOC107015574
Tamaricaceae	Reaumuria soongarica	1	gene_1680
Tamaricaceae	Tamarix chinensis	1	TC04G1593
Zosteraceae	Zostera marina	1	Zosma02g22570.v3.1