halophFGD

Basic Information

Locus ID: Ag9G00875

Species & Taxonomic ID: Apium graveolens & 4045

Genome Assembly: GCA_009905375.1

Description: LRR receptor-like serine threonine-protein kinase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9	88499988	88503374	+	Ag9G00875

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.36	67,491.89 Da	35.64	105.77	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13855	Leucine rich repeat	163	222	7.2E-11	IPR001611
Pfam	PF07714	Protein tyrosine and serine/threonine kinase	448	535	6.2E-8	IPR001245
Pfam	PF08263	Leucine rich repeat N-terminal domain	27	65	2.9E-8	IPR013210
Pfam	PF13855	Leucine rich repeat	258	318	1.5E-8	IPR001611
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	424	535	1.99E-19	IPR011009
SUPERFAMILY	SSF52058	L domain-like	70	324	4.08E-53	-
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	421	520	9.1E-23	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	229	353	7.0E-34	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	25	161	1.2E-31	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	162	228	5.8E-18	IPR032675
SMART	SM00369	LRR_typ_2	305	329	13.0	IPR003591
SMART	SM00369	LRR_typ_2	185	208	170.0	IPR003591
SMART	SM00219	tyrkin_6	445	594	0.006	IPR020635
SMART	SM00369	LRR_typ_2	91	115	21.0	IPR003591
SMART	SM00369	LRR_typ_2	281	304	65.0	IPR003591
SMART	SM00369	LRR_typ_2	209	233	10.0	IPR003591
SMART	SM00369	LRR_typ_2	139	163	47.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	445	615	10.732666	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	283	305	7.465533	IPR001611
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	163	186	7.172906	IPR001611
PRINTS	PR00019	Leucine-rich repeat signature	305	318	1.3E-5	-
PRINTS	PR00019	Leucine-rich repeat signature	284	297	1.3E-5	-
MobiDBLite	mobidb-lite	consensus disorder prediction	402	422	-	-

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0004672 (protein kinase activity) GO:0004713 (protein tyrosine kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G75640.1	Leucine-rich receptor-like protein kinase family protein.
RefSeq	XP_017256861.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Daucus carota subsp. sativus]
Swiss-Prot	C0LGS2	Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana OX=3702 GN=At4g36180 PE=1 SV=1
TrEMBL	A0A161ZRA1	Protein kinase domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022443 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
PRJNA723697	SRX10692252	0.165795	Shengqin NO.2	seed	S1-1	S1-1	initial formation stage (S1)
PRJNA723697	SRX10692254	0.221023	Shengqin NO.2	seed	S1-3	S1-3	initial formation stage (S1)
PRJNA723697	SRX10692255	0.144694	Shengqin NO.2	seed	S3-1	S3-1	middle development stage (S3)
PRJNA723697	SRX10692256	0	Shengqin NO.2	seed	S3-2	S3-2	middle development stage (S3)
PRJNA723697	SRX10692257	0.112937	Shengqin NO.2	seed	S3-3	S3-3	middle development stage (S3)
PRJNA723697	SRX10692258	0	Shengqin NO.2	seed	S5-1	S5-1	maturation stage (S5)
PRJNA723697	SRX10692259	0.275588	Shengqin NO.2	seed	S5-2	S5-2	maturation stage (S5)
PRJNA723697	SRX10692260	0	Shengqin NO.2	seed	S5-3	S5-3	maturation stage (S5)
PRJNA884666	SRX17729272	2.021018	celery	anther		W99A-r1	male sterile lineÂ
PRJNA884666	SRX17729273	1.823135	celery	anther		W99A-r2	male sterile lineÂ
PRJNA884666	SRX17729274	2.122081	celery	anther		W99A-r3	male sterile lineÂ
PRJNA884666	SRX17729275	1.831717	celery	anther		W99B-r1	maintainer line
PRJNA884666	SRX17729276	0.846511	celery	anther		W99B-r2	maintainer line
PRJNA884666	SRX17729277	0.897373	celery	anther		W99B-r3	maintainer line
PRJNA884180	SRX17743889	0	var. secalinum Yablochny	collenchyma		Col_S1_rep1-1
PRJNA884180	SRX17748056	0.282493	var. secalinum Yablochny	collenchyma		Col_S1_rep3	biological replicate 3
PRJNA884180	SRX17748057	0.399101	var. secalinum Yablochny	collenchyma		Col_S1_rep4	biological replicate 4
PRJNA884180	SRX17748678	0.139512	var. secalinum Yablochny	parenchyma		Par_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748679	0.025378	var. secalinum Yablochny	parenchyma		Par_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748680	0.507964	var. secalinum Yablochny	parenchyma		Par_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748681	0.412274	var. secalinum Yablochny	parenchyma		Par_S1_rep4	Biological replicate 4
PRJNA884180	SRX17748898	0.5633	var. secalinum Yablochny	vascular bundle		Vas_S1_rep1	Biological replicate 1
PRJNA884180	SRX17748899	0.799422	var. secalinum Yablochny	vascular bundle		Vas_S1_rep2	Biological replicate 2
PRJNA884180	SRX17748900	1.069557	var. secalinum Yablochny	vascular bundle		Vas_S1_rep3	Biological replicate 3
PRJNA884180	SRX17748901	0.982363	var. secalinum Yablochny	vascular bundle		Vas_S1_rep4	Biological replicate 4
PRJNA884180	SRX17749129	0.200013	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep1	Biological replicate 1
PRJNA884180	SRX17749130	0.656343	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep2	Biological replicate 2
PRJNA884180	SRX17749131	0.381966	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep3	Biological replicate 3
PRJNA884180	SRX17749132	0.157313	var. secalinum Yablochny	part of the celery petiole without collenchyma strands		Collenchyma-free_S1_rep4	Biological replicate 4
PRJNA1124269	SRX24936411	0.031338		leaf		CK1	replicate=biological replicate1
PRJNA1124269	SRX24936412	0.064078		leaf		CK2	replicate=biological replicate2
PRJNA1124269	SRX24936413	0		leaf		CK3	replicate=biological replicate3
PRJNA1124269	SRX24936414	0.072729		leaf		D1	replicate=biological replicate1
PRJNA1124269	SRX24936415	0.369987		leaf		D2	replicate=biological replicate2
PRJNA1124269	SRX24936416	0		leaf		D3	replicate=biological replicate3
PRJNA1124269	SRX24936417	0		leaf		MD1	replicate=biological replicate1
PRJNA1124269	SRX24936418	0		leaf		MD2	replicate=biological replicate2
PRJNA1124269	SRX24936419	0.18145		leaf		MD3	replicate=biological replicate3
PRJNA387092	SRX2833309	2.016815	shanghaihuangxin	leaf	leaves between 0.5 and 1 cm in breadth, folded;	stage 2
PRJNA387092	SRX2833321	0.084509	shanghaihuangxin	leaf	leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion	stage 5
PRJNA387092	SRX2833323	0	shanghaihuangxin	leaf	leaves >3 cm, unfolded, with clearstem extension	stage 7
PRJNA543957	SRX5879598	0.261337	Zhangzhou lvqing	stem		Se3	100 ppm Na2SeO4
PRJNA543957	SRX5879599	0.177382	Zhangzhou lvqing	stem		Se2	100 ppm Na2SeO4
PRJNA543957	SRX5879600	0.037183	Zhangzhou lvqing	stem		Mock2	mock
PRJNA543957	SRX5879601	0.171761	Zhangzhou lvqing	stem		Mock1	mock
PRJNA543957	SRX5879602	0.169283	Zhangzhou lvqing	stem		Se1	100 ppm Na2SeO4
PRJNA543957	SRX5879603	0.114424	Zhangzhou lvqing	stem		Mock3	mock
PRJNA609149	SRX7815917	0.801231	Jinnan Shiqin	flower bud	early flower bud	early flower bud
PRJNA609149	SRX7815918	0.674131	Jinnan Shiqin	flower bud	middle flower bud	middle flower bud
PRJNA609149	SRX7815919	0.359814	Jinnan Shiqin	flower bud	early flowering period	early flowering period

Network

🔍 Co-expression Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg10570, jg11811, jg22717, jg39620
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1193, gene_24097
Amaranthaceae	Atriplex hortensis	2	Ah023528, Ah023529
Amaranthaceae	Beta vulgaris	2	BVRB_1g004920, BVRB_1g004930
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg28869, Sbi_jg28870, Sbi_jg3064, Sbi_jg3066
Amaranthaceae	Salicornia europaea	2	Seu_jg6826, Seu_jg6827
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000901, GOSA_00000902
Amaranthaceae	Suaeda glauca	6	Sgl11648, Sgl11649, Sgl17145, Sgl17146, Sgl42930, Sgl47725
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000013148, gene:ENSEOMG00000015974 ... gene:ENSEOMG00000033564, gene:ENSEOMG00000036008, gene:ENSEOMG00000046318, gene:ENSEOMG00000048146
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0009360, CQ.Regalona.r1.1AG0009380 ... CQ.Regalona.r1.1BG0016480, CQ.Regalona.r1.1BG0016490
Anacardiaceae	Pistacia vera	2	pistato.v30047320, pistato.v30209190
Apiaceae	Apium graveolens	3	Ag4G02268, Ag5G00550, Ag9G00875
Arecaceae	Cocos nucifera	1	COCNU_07G007550
Arecaceae	Phoenix dactylifera	1	gene-LOC103699099
Asparagaceae	Asparagus officinalis	1	AsparagusV1_Unassigned.21.V1.1
Asteraceae	Flaveria trinervia	2	Ftri18G03886, Ftri18G22920
Brassicaceae	Arabidopsis thaliana	2	AT1G75640.1, AT4G36180.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10018033m.g.v1.0, Thhalv10024296m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp5g30750.v2.2, Sp7g33930.v2.2
Brassicaceae	Brassica nigra	2	BniB03g054270.2N, BniB05g002430.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq06G0213, Ceq06G0214
Casuarinaceae	Casuarina glauca	3	Cgl06G0228, Cgl06G0229, Cgl07G2568
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno10g04950
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate03g23630, gene.Thate08g19700
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-6568, nbisL1-mrna-6994, nbisL1-mrna-9951
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.2451, evm.TU.LG06.660
Plantaginaceae	Plantago ovata	3	Pov_00014597, Pov_00030691, Pov_00038712
Plumbaginaceae	Limonium bicolor	1	Lb1G06196
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_4AG0306680, gene-QOZ80_4BG0337680
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0186650.1.CDS1
Poaceae	Lolium multiflorum	1	gene-QYE76_045673
Poaceae	Oryza coarctata	2	Oco07G013720, Oco08G013220
Poaceae	Oryza sativa	1	LOC_Os04g48760.1
Poaceae	Paspalum vaginatum	1	gene-BS78_06G194900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0307266, Pt_Chr0307312
Poaceae	Sporobolus alterniflorus	4	Chr23G006050, Chr25G004990, Chr26G013560, Chr30G004800
Poaceae	Thinopyrum elongatum	1	Tel2E01G694000
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG057540, gene_TRIDC2BG060340
Poaceae	Triticum aestivum	3	TraesCS2A02G397200.1.cds1, TraesCS2B02G415500.1.cds1 ... TraesCS2D02G395000.1.cds1
Poaceae	Zea mays	3	Zm00001eb073370_P001, Zm00001eb200690_P001 ... Zm00001eb428530_P001
Poaceae	Zoysia japonica	1	nbis-gene-22623
Poaceae	Zoysia macrostachya	1	Zma_g20280
Portulacaceae	Portulaca oleracea	4	evm.TU.LG03.1527, evm.TU.LG04.1645, evm.TU.LG10.1240 ... evm.TU.LG12.200
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g08300, gene.Posoc07g04860
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_3_RagTag.172, evm.TU.Scaffold_6_RagTag.2084 ... evm.TU.Scaffold_7_RagTag.698
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-17046, nbisL1-mrna-19012
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-20093, nbisL1-mrna-3312, nbisL1-mrna-9121
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-11731, nbisL1-mrna-5929, nbisL1-mrna-6577
Rhizophoraceae	Kandelia candel	3	add.evm.TU.utg000002l.221, add.evm.TU.utg000011l.529 ... add.evm.TU.utg000019l.478
Rhizophoraceae	Kandelia obovata	2	Maker00007223, Maker00012858
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-19387, nbisL1-mrna-20042, nbisL1-mrna-23053
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-2401, nbisL1-mrna-3028, nbisL1-mrna-9989
Salicaceae	Populus euphratica	3	populus_peu15298, populus_peu23674, populus_peu32955
Solanaceae	Lycium barbarum	3	gene-LOC132618396, gene-LOC132623831, gene-LOC132628089
Solanaceae	Solanum chilense	3	SOLCI001963700, SOLCI006072300, SOLCI007131300
Solanaceae	Solanum pennellii	3	gene-LOC107008688, gene-LOC107012513, gene-LOC107015950
Tamaricaceae	Reaumuria soongarica	1	gene_16281
Tamaricaceae	Tamarix chinensis	1	TC09G0073
Zosteraceae	Zostera marina	1	Zosma05g31540.v3.1