Basic Information
Locus ID:
Ag9G00816
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
F-box WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 75910887 | 75921199 | - | Ag9G00816 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 48,712.65 Da | 39.78 | 91.42 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 32 | 72 | 4.1E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 76 | 1.7E-13 | IPR036047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 116 | 433 | 2.2E-32 | IPR036322 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 70 | 7.2E-10 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 106 | 436 | 1.6E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 274 | 314 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 271 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 357 | 180.0 | IPR001680 |
| SMART | SM00256 | fbox_2 | 30 | 70 | 2.0E-6 | IPR001810 |
| SMART | SM00320 | WD40_4 | 112 | 149 | 0.94 | IPR001680 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 70 | 11.352077 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52030.2 | F-box family protein with WD40/YVTN repeat doamin. | 0 |
| RefSeq | XP_017214758.1 | PREDICTED: F-box/WD-40 repeat-containing protein At3g52030 isoform X2 [Daucus carota subsp. sativus] | 0 |
| Q9SV01 | F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana OX=3702 GN=At3g52030 PE=4 SV=2 | 0 | |
| TrEMBL | A0A161ZU56 | F-box domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022375 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 13.080107 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 10.003379 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 12.476315 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 12.706156 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 10.170293 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.654615 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 15.486837 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 16.733017 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 16.182573 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 18.063873 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 16.616859 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 17.019356 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 16.858433 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 13.869191 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 13.382821 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 11.403218 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 15.062897 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 13.094019 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 9.841193 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 14.520829 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 15.457319 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 15.926945 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 17.715693 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 14.181264 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.357548 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 12.750684 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 12.93318 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 12.705648 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 13.0193 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 18.000303 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 14.409466 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 13.665989 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 16.975393 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 16.765039 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 17.802715 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 14.749583 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 16.010426 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 19.68185 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 9.447924 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 5.958858 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 6.426119 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 17.671888 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 18.806116 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 28.497543 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 28.465294 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 14.045594 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 23.38604 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 15.799557 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 16.688284 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 15.637504 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26652 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15337 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035687 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028960 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg21733, Sbi_jg21734, Sbi_jg22086 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16011 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008629 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63034, Sgl67656 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016616, gene:ENSEOMG00000022327 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017220, CQ.Regalona.r1.2BG0019020 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30229750, pistato.v30229760 |
| Apiaceae | Apium graveolens | 1 | Ag9G00816 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G004210 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103697300 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.2733.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24847 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G52030.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10010397m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g10260.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g074370.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0809 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0818 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g03270 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09420 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.98 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039348 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13331 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.517, BH04.560, CH04.563 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0670560, gene-QOZ80_9BG0693940 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0347490.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064565 |
| Poaceae | Oryza coarctata | 1 | Oco22G003320 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g07970.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G090300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104089, Pt_Chr0104093 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G020260, Chr16G010530, Chr17G009640 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G152600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG034740, gene_TRIDC4BG015170 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G218600.1, TraesCS4B02G097400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb091260_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-27212 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18515 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.564, evm.TU.LG09.2109 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g06910 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.299 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19427 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9107 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6995 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.182 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010375 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8852 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20180 |
| Salicaceae | Populus euphratica | 1 | populus_peu35908 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644804 |
| Solanaceae | Solanum chilense | 1 | SOLCI004949700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012294 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6997 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0071 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22840.v3.1 |