Basic Information
Locus ID:
Ag9G00808
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
transport) protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 73776793 | 73795479 | + | Ag9G00808 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 120,806.46 Da | 50.92 | 79.06 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 254 | 292 | 0.083 | IPR001680 |
| Pfam | PF12931 | Sec23-binding domain of Sec16 | 556 | 750 | 2.3E-9 | IPR024298 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 12 | 337 | 9.44E-47 | IPR036322 |
| Gene3D | G3DSA:1.25.40.1030 | - | 351 | 771 | 7.5E-104 | - |
| Gene3D | G3DSA:1.20.940.10 | Functional domain of the splicing factor Prp18 | 1000 | 1111 | 1.0E-28 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 337 | 5.6E-105 | IPR015943 |
| SMART | SM00320 | WD40_4 | 295 | 335 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 161 | 201 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 248 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 54 | 100 | 350.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 252 | 292 | 9.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 151 | 4.2E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 259 | 297 | 9.335602 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 259 | 301 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 118 | 152 | 9.906923 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 512 | 538 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 974 | 990 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 991 | 1005 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 1005 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G63460.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_017215045.1 | PREDICTED: protein transport protein SEC31 homolog B-like [Daucus carota subsp. sativus] | 0 |
| Q8L611 | Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana OX=3702 GN=SEC31B PE=1 SV=1 | 0 | |
| TrEMBL | A0A164VFF1 | WD_REPEATS_REGION domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 42.328842 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 16.581072 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 17.446362 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 19.212454 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 19.023163 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 13.064775 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 8.58749 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 4.154457 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 30.531481 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 29.151796 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 32.327328 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 38.428799 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 29.193214 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 23.015074 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 20.193615 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 29.70932 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 21.24371 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 18.765358 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 14.133058 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 15.464003 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 13.813623 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 14.830749 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 18.021441 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 20.736242 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 16.75676 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 21.090971 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 17.963129 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 13.331567 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 21.274775 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0.341605 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0.628032 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0.6136 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0.960641 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 9.400562 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 1.269373 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 1.186958 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0.218512 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0.678076 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 16.750416 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 7.254686 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 3.230164 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 4.154961 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 2.405752 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 1.066508 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0.925569 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 6.017026 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 2.930567 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 26.383671 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 19.791586 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 17.784628 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg1581, jg26645, jg26646, jg29002 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11259 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035675 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g028860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21723, Sbi_jg22096 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16020 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008639 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl62953, Sgl63043, Sgl67593 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019227, gene:ENSEOMG00000022702 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0017350, CQ.Regalona.r1.2BG0019120 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30229650 |
| Apiaceae | Apium graveolens | 2 | Ag1G00238, Ag9G00808 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G017830, COCNU_12G004510, COCNU_16G001910 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701661, gene-LOC103716930, gene-LOC103719227 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_05.27.V1.1, AsparagusV1_05.408.V1.1 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G08744, Ftri5G25825 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G18830.1, AT3G63460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005758m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g00090.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g007880.2N, BniB06g052010.2N, BniB06g061010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0814 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0824 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g17140, gene.Cymno03g03310 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0345s00008.v1.0, Dusal.0345s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g14190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2660 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00014885, Pov_00039337 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G18905, Lb4G23426 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.3593, AH03.3933, BH01.3940, BH03.4224, CH01.4205 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0580080, gene-QOZ80_7BG0611160 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0117400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_039137 |
| Poaceae | Oryza coarctata | 2 | Oco13G014660, Oco14G015500 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g46370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G371700 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0305046, Pt_Chr0600144 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr0G003020, Chr19G000990, Chr24G013390, Chr27G016430 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G273500, Tel6E01G603400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG016340, gene_TRIDC2BG019970 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G132900.1, TraesCS2B02G156400.3 ... |
| Poaceae | Zea mays | 2 | Zm00001eb110650_P001, Zm00001eb329590_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-196, nbis-gene-33157 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5704, Zma_g6995 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1976, evm.TU.LG15.1169 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g04970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.295, evm.TU.Scaffold_8_RagTag.1431 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19430, nbisL1-mrna-8525 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10913, nbisL1-mrna-20737, nbisL1-mrna-4704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15234, nbisL1-mrna-6999 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000018l.163, evm.TU.utg000028l.179 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00002813, Maker00010871 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-8855, nbisL1-mrna-9504 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18802, nbisL1-mrna-20184 |
| Salicaceae | Populus euphratica | 2 | populus_peu01914, populus_peu35899 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644816 |
| Solanaceae | Solanum chilense | 1 | SOLCI005947600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002682 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2071_chr01_+, gene_12714 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G0082, TC05G1318 |
| Zosteraceae | Zostera marina | 1 | Zosma01g36490.v3.1 |