Basic Information
Locus ID:
Ag9G00761
Species & Taxonomic ID:
Apium graveolens & 4045
Genome Assembly:
GCA_009905375.1
Description:
SUN domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 60084281 | 60085564 | - | Ag9G00761 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 28,691.00 Da | 32.09 | 86.06 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07738 | Sad1 / UNC-like C-terminal | 123 | 254 | 1.5E-34 | IPR012919 |
| Gene3D | G3DSA:2.60.120.260 | - | 60 | 255 | 4.2E-48 | - |
| ProSiteProfiles | PS51469 | SUN domain profile. | 91 | 256 | 34.784447 | IPR012919 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04990.1 | SAD1/UNC-84 domain protein 1. Encodes a member of the Sad1/UNC-84 (SUN)-domain proteins: AtSUN1(At5g04990), AtSUN2(AT3G10730). SUN domain proteins are part of the cytoskeletal-nucleoskeletal bridging complexes. AtSUN1 and AtSUN2 are localized to the nuclear envelope and are present as homomers and heteromers in vivo. | 0 |
| RefSeq | XP_017257485.1 | PREDICTED: protein SAD1/UNC-84 domain protein 1-like [Daucus carota subsp. sativus] | 0 |
| Q9FF75 | SUN domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SUN1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A164VHM7 | SUN domain-containing protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022277 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| PRJNA723697 | SRX10692252 | 0 | Shengqin NO.2 | seed | S1-1 | S1-1 | initial formation stage (S1) |
| PRJNA723697 | SRX10692254 | 0 | Shengqin NO.2 | seed | S1-3 | S1-3 | initial formation stage (S1) |
| PRJNA723697 | SRX10692255 | 0 | Shengqin NO.2 | seed | S3-1 | S3-1 | middle development stage (S3) |
| PRJNA723697 | SRX10692256 | 0 | Shengqin NO.2 | seed | S3-2 | S3-2 | middle development stage (S3) |
| PRJNA723697 | SRX10692257 | 0 | Shengqin NO.2 | seed | S3-3 | S3-3 | middle development stage (S3) |
| PRJNA723697 | SRX10692258 | 0.186611 | Shengqin NO.2 | seed | S5-1 | S5-1 | maturation stage (S5) |
| PRJNA723697 | SRX10692259 | 0 | Shengqin NO.2 | seed | S5-2 | S5-2 | maturation stage (S5) |
| PRJNA723697 | SRX10692260 | 0 | Shengqin NO.2 | seed | S5-3 | S5-3 | maturation stage (S5) |
| PRJNA884666 | SRX17729272 | 0 | celery | anther | W99A-r1 | male sterile line | |
| PRJNA884666 | SRX17729273 | 0.668082 | celery | anther | W99A-r2 | male sterile line | |
| PRJNA884666 | SRX17729274 | 0 | celery | anther | W99A-r3 | male sterile line | |
| PRJNA884666 | SRX17729275 | 3.448484 | celery | anther | W99B-r1 | maintainer line | |
| PRJNA884666 | SRX17729276 | 15.730678 | celery | anther | W99B-r2 | maintainer line | |
| PRJNA884666 | SRX17729277 | 11.939704 | celery | anther | W99B-r3 | maintainer line | |
| PRJNA884180 | SRX17743889 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep1-1 | ||
| PRJNA884180 | SRX17748056 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep3 | biological replicate 3 | |
| PRJNA884180 | SRX17748057 | 0 | var. secalinum Yablochny | collenchyma | Col_S1_rep4 | biological replicate 4 | |
| PRJNA884180 | SRX17748678 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748679 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748680 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748681 | 0 | var. secalinum Yablochny | parenchyma | Par_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17748898 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17748899 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17748900 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17748901 | 0 | var. secalinum Yablochny | vascular bundle | Vas_S1_rep4 | Biological replicate 4 | |
| PRJNA884180 | SRX17749129 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep1 | Biological replicate 1 | |
| PRJNA884180 | SRX17749130 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep2 | Biological replicate 2 | |
| PRJNA884180 | SRX17749131 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep3 | Biological replicate 3 | |
| PRJNA884180 | SRX17749132 | 0 | var. secalinum Yablochny | part of the celery petiole without collenchyma strands | Collenchyma-free_S1_rep4 | Biological replicate 4 | |
| PRJNA1124269 | SRX24936411 | 0 | leaf | CK1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936412 | 0 | leaf | CK2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936413 | 0 | leaf | CK3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936414 | 0 | leaf | D1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936415 | 1.157753 | leaf | D2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936416 | 0 | leaf | D3 | replicate=biological replicate3 | ||
| PRJNA1124269 | SRX24936417 | 0 | leaf | MD1 | replicate=biological replicate1 | ||
| PRJNA1124269 | SRX24936418 | 0 | leaf | MD2 | replicate=biological replicate2 | ||
| PRJNA1124269 | SRX24936419 | 0 | leaf | MD3 | replicate=biological replicate3 | ||
| PRJNA387092 | SRX2833309 | 0 | shanghaihuangxin | leaf | leaves between 0.5 and 1 cm in breadth, folded; | stage 2 | |
| PRJNA387092 | SRX2833321 | 0 | shanghaihuangxin | leaf | leaves between 2and 2.5 cm in breadth, nearly unfolded, with clear stem exten-sion | stage 5 | |
| PRJNA387092 | SRX2833323 | 0 | shanghaihuangxin | leaf | leaves >3 cm, unfolded, with clearstem extension | stage 7 | |
| PRJNA543957 | SRX5879598 | 0 | Zhangzhou lvqing | stem | Se3 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879599 | 0 | Zhangzhou lvqing | stem | Se2 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879600 | 0 | Zhangzhou lvqing | stem | Mock2 | mock | |
| PRJNA543957 | SRX5879601 | 0 | Zhangzhou lvqing | stem | Mock1 | mock | |
| PRJNA543957 | SRX5879602 | 0 | Zhangzhou lvqing | stem | Se1 | 100 ppm Na2SeO4 | |
| PRJNA543957 | SRX5879603 | 0 | Zhangzhou lvqing | stem | Mock3 | mock | |
| PRJNA609149 | SRX7815917 | 0.266493 | Jinnan Shiqin | flower bud | early flower bud | early flower bud | |
| PRJNA609149 | SRX7815918 | 0.304623 | Jinnan Shiqin | flower bud | middle flower bud | middle flower bud | |
| PRJNA609149 | SRX7815919 | 0 | Jinnan Shiqin | flower bud | early flowering period | early flowering period |
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1500 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah006672 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg132, Sbi_jg36404 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4430 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00014291, GOSA_00014292 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl25294, Sgl25309, Sgl25311, Sgl30465 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010851, gene:ENSEOMG00000029108 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0013630, CQ.Regalona.r1.4BG0015890 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30168790 |
| Apiaceae | Apium graveolens | 2 | Ag7G01654, Ag9G00761 |
| Arecaceae | Cocos nucifera | 3 | COCNU_12G005340, scaffold000460G000030 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704994, gene-LOC103713858, gene-LOC103718099 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1720.V1.1, AsparagusV1_05.44.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G29310 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G10730.1, AT5G04990.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10013430m.g.v1.0, Thhalv10015457m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g09060.v2.2, Sp6g37810.v2.2, Sp7g10590.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g029430.2N, BniB07g057430.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1572 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1603 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g13520, gene.Cymno18g01550 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g09190, gene.Thate06g13220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-3125, nbisL1-mrna-3699 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2078 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb1G05595, Lb3G19321, Lb4G21873, Lb4G21876 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.895, AH07.548, BH07.674, CH02.1359, CH07.553 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004430, gene-QOZ80_1AG0027990 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0020270.1, HORVU.MOREX.r3.3HG0255900.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_009468, gene-QYE76_052280, gene-QYE76_052347 |
| Poaceae | Oryza coarctata | 4 | Oco01G007450, Oco02G007740, Oco04G006830, Oco10G005520 |
| Poaceae | Oryza sativa | 3 | LOC_Os01g16220.1, LOC_Os05g18770.1, LOC_Os09g29530.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G113800, gene-BS78_04G056800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0500592, Pt_Chr0603798, Pt_Chr0603878 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G013210, Chr02G026740, Chr03G001460, Chr05G004460 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G175300, Tel3E01G319500 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG014960, gene_TRIDC1BG015630 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G109200.1, TraesCS1B02G108700.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb128110_P001, Zm00001eb233650_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-24515, nbis-gene-32496, nbis-gene-51704 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g7366, Zma_g8401, Zma_g9689 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1389 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g28700, gene.Posoc07g11070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1116 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3861, nbisL1-mrna-6499 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3005 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21098 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.839 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017028 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11024 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13321 |
| Salicaceae | Populus euphratica | 2 | populus_peu06007, populus_peu19873 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645341 |
| Solanaceae | Solanum chilense | 1 | SOLCI001256600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007936 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.24472_chr08_-, STRG.31950_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2424, TC06G0712 |
| Zosteraceae | Zostera marina | 2 | Zosma02g15700.v3.1, Zosma06g30720.v3.1 |